Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,627,763 – 14,627,885 |
Length | 122 |
Max. P | 0.663096 |
Location | 14,627,763 – 14,627,866 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.67 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -15.27 |
Energy contribution | -16.18 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.13 |
Mean z-score | -2.41 |
Structure conservation index | 0.61 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14627763 103 + 23771897 CAUUUUCCAUUUCCCAUUGUUGUCUGCCUGCGAAAUUAUGCAGCAAUUCAUAAAAAUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUGUUUU ......................((((((.((.(..(((((.(....).)))))...).)).))))))(((((.((((((((((...))))))))))..))))) ( -26.40) >DroPse_CAF1 30822 93 + 1 CUGG-UAC---ACCCAUUGUUGUCUGCUGGCCAAAUUAUGCAUCAAUUCAUAAAAAUGGCUGGCAA------CAGUCCCGUUACUUUAAUGCCGUUACAGUGU ..((-...---.))(((((((((.(((..((((..(((((........)))))...))))..))))------))....(((((...))))).....)))))). ( -21.40) >DroSec_CAF1 26645 103 + 1 CAUUUUCCAUUUCCCAUUGUUGUCUGCCUGCAAAAUUAUGCAGCAAUUCAUAAAAAUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUAUUUU ..................(((.((((((.((....(((((.(....).))))).....)).))))))..))).((((((((((...))))))))))....... ( -25.60) >DroSim_CAF1 22555 102 + 1 CAUUUUCCAUUUCCCAUUGUUGUUUGCCUGCAAAAUUAUGCAGCAAUUCAUAAAAAUGGAUGGCAGAAAACCCAUUGGCGUUACUUUAAUGCCGA-AUAUNNN ..((((((((...(((((..((.((((.((((......))))))))..))....))))))))).))))......(((((((((...)))))))))-....... ( -25.70) >DroEre_CAF1 29969 103 + 1 CAUUUUCCAUUUGCCAUUGUUGUCUGCCGGCAAAAUUAUGCAGCAAUUCAUAAAAAUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUGUUAU ..................(((.(((((((((....(((((.(....).))))).....)))))))))..))).((((((((((...))))))))))....... ( -29.50) >DroPer_CAF1 30822 93 + 1 CUGG-UAC---ACCCAUUGUUGUCUGCUGGCCAAAUUAUGCAUCAAUUCAUAAAAAUGGCUGGCAA------CAGUCCCGUUACUUUAAUGCCGUUACAGUGU ..((-...---.))(((((((((.(((..((((..(((((........)))))...))))..))))------))....(((((...))))).....)))))). ( -21.40) >consensus CAUUUUCCAUUUCCCAUUGUUGUCUGCCGGCAAAAUUAUGCAGCAAUUCAUAAAAAUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUAUUGU ......................((((((.((....(((((........))))).....)).))))))......((((((((((...))))))))))....... (-15.27 = -16.18 + 0.92)
Location | 14,627,787 – 14,627,885 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.85 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -10.75 |
Energy contribution | -11.58 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.14 |
Mean z-score | -2.31 |
Structure conservation index | 0.46 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14627787 98 + 23771897 UGCCUGCGAAAUUAUGCAGCAAUUCAUAAAA-AUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUGUUUUUCUAACAUUGAUUUUAGCU .(((.((.(..(((((.(....).)))))..-.).)).)))((((((((.((((((((((...))))))))))..))))))))................ ( -27.10) >DroGri_CAF1 34867 97 + 1 UGU-GGAGAAAUUAUGCAGCAAUUCAUAAAAAAUGGCAACCAAU-GGCCCAGCGAUAUUACUUUAAGACCCUAAUGUUAUUUUCACAUAGAUUUCAGCA (((-(((((..(((((.(....).))))).....(((.......-.)))....(((((((...........))))))).))))))))............ ( -13.10) >DroSec_CAF1 26669 98 + 1 UGCCUGCAAAAUUAUGCAGCAAUUCAUAAAA-AUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUAUUUUUCUAACAUCGAUUUUAGCU (((.((((......))))))).......(((-((.(.((..(((((((..((((((((((...))))))))))...)))))))..)).).))))).... ( -26.50) >DroEre_CAF1 29993 98 + 1 UGCCGGCAAAAUUAUGCAGCAAUUCAUAAAA-AUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUGUUAUUCAAACAUAGAUUUCAGCU (((((((....(((((.(....).)))))..-...)))))))((((.....(((((((((...)))))))))((((((.....))))))..)))).... ( -28.60) >DroYak_CAF1 30482 98 + 1 UGCCUGCAAAAUUAUGCAGCAAUUCAUAAAA-AUGGCUGGCAGAAAAUCCAUUGGCGUUACUUUAAUGCCUAUAUGUUAGUCUAACAUAGAUUUUAGCU ((((.((....(((((.(....).)))))..-...)).)))).((((((....(((((((...)))))))..(((((((...))))))))))))).... ( -24.10) >DroPer_CAF1 30842 88 + 1 UGCUGGCCAAAUUAUGCAUCAAUUCAUAAAA-AUGGCUGGCAA------CAGUCCCGUUACUUUAAUGCCGUUACAGUGUUU----AUCGAUUGCAGCC (((..((((..(((((........)))))..-.))))..))).------(((((....((((.((((...)))).))))...----...)))))..... ( -20.30) >consensus UGCCGGCAAAAUUAUGCAGCAAUUCAUAAAA_AUGGCUGGCAGAAAAACCAUUGGCGUUACUUUAAUGCCGAUAUGUUAUUCUAACAUAGAUUUCAGCU ((((.((....(((((........)))))......)).))))........((((((((((...)))))))))).......................... (-10.75 = -11.58 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:31 2006