Locus 5291

Sequence ID 3L_DroMel_CAF1
Location 14,626,785 – 14,626,878
Length 93
Max. P 0.530406
window8365

overview

Window 5

Location 14,626,785 – 14,626,878
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 82.51
Mean single sequence MFE -20.57
Consensus MFE -13.76
Energy contribution -13.71
Covariance contribution -0.05
Combinations/Pair 1.27
Mean z-score -1.60
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.530406
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14626785 93 + 23771897
UAUCAAAUCUAGCCGCAAAAUCUCCCCUUCGCACCCAUGGUAACUAAACCAACAGUUUCGGUUUCUUUGUUUUUGCCCAACGACGAGGGUGCA
..............................((((((.((((......))))...(((..(((............))).))).....)))))). ( -19.10)
>DroSec_CAF1 25685 93 + 1
UAUCAAAUCUAGCCGCAAAAUCUCCCCUUCGCACCCAUGGUAACCAAACCAACAGUUUCGGUUUCUUUGUUUUUCCCCAACGACGAGGGUGCA
..............................((((((.....((((((((.....)))).))))((.(((((.......))))).)))))))). ( -19.30)
>DroSim_CAF1 21588 93 + 1
UAUCAAAUCUAGCCGCAAAAUCUCCCCUUCGCACCCAUGGUAACCAACCGAACAGUUUCGGUUUCUUUGUUUUCCCCCAACGACGAGGGUGCA
..............................((((((.........(((((((....)))))))((.(((((.......))))).)))))))). ( -22.00)
>DroEre_CAF1 28975 93 + 1
UAUCAAAUCUAGCCGCAAAAUCUCCCCUUCGCACCCAUGGUAACCAGCCCAACAGCUUCGGUUUCCCAGUUGCUGCCCAACGACGAGGGUGCA
..............................((((((.(((.(((((((......)))..))))..)))((((........))))..)))))). ( -23.60)
>DroYak_CAF1 29453 93 + 1
UAUCCAAUCUAGCCGCAAAAUCUCCCCUUCGCACCCAUGGUAACCAACCCAACAGUGUCGGUUUCCCUCUUUUCGCCCAACGACGAGGGUGCA
..............................((((((..((.((((.((.(....).)).)))).))......(((........))))))))). ( -20.30)
>DroAna_CAF1 24470 81 + 1
--UCCAAUCCACCCACAAUAUCUAAACACUGCACCCAUGGUAAC---------UGUUUCGGUUUCCUU-UGUUCGAAAAGUGUCGGGGGUGCA
--............................((((((..((.(((---------((...))))).))..-...((((......)))))))))). ( -19.10)
>consensus
UAUCAAAUCUAGCCGCAAAAUCUCCCCUUCGCACCCAUGGUAACCAACCCAACAGUUUCGGUUUCCUUGUUUUCGCCCAACGACGAGGGUGCA
..............................((((((..((.((((..............)))).))......(((........))))))))). (-13.76 = -13.71 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:29 2006