| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,620,256 – 14,620,361 |
| Length | 105 |
| Max. P | 0.922664 |
| Location | 14,620,256 – 14,620,361 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 87.13 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -23.53 |
| Energy contribution | -23.62 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.36 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14620256 105 - 23771897 CCCACCCAA-AACCCCAAUUAUAUUUAGACAACGCUU--UGCGUUG---UUGCAACGCCCACGCUUCUU-UU--GGAGCACCCUCAUCUGAUCUCGGGCUGAAAUAUGAUUAUA .........-......((((((((((.((((((((..--.))))))---)).....((((..(((((..-..--)))))....((....))....))))..))))))))))... ( -29.80) >DroSec_CAF1 19135 106 - 1 CCCACCCAAAAACCCCAAUUAUAUUUAGACAACGCUU--UGCGUUG---UUGCAACGCCCACGCUUCUU-UU--GGAGCACCCUCAUCGGAUCUCGGGCUGAAAUAUGAUUAUA ................((((((((((.((((((((..--.))))))---)).....((((..(((((..-..--)))))..((.....)).....))))..))))))))))... ( -31.50) >DroSim_CAF1 14795 106 - 1 CCCACCCAAAAACCCCAAUUAUAUUUAGACAACGCUU--UGCGUUG---UUGCAACGCCCACGCUUCUU-UU--GGAGCACCCUCAUCUGAUCUCGGGCUGAAAUAUGAUUAUA ................((((((((((.((((((((..--.))))))---)).....((((..(((((..-..--)))))....((....))....))))..))))))))))... ( -29.80) >DroEre_CAF1 22484 105 - 1 CCCAACCAA-AACCCCAAUUAUAUUUAGACAACGCUU--UGGGUUG---UUGCAACGCCCACGCUUCUU-UU--GGAGCACCCUCAUCUGAUCCCGGGCUGAAAUAUGAUUAUA .........-......((((((((((.((((((.(..--.).))))---)).....((((..(((((..-..--)))))....((....))....))))..))))))))))... ( -25.70) >DroYak_CAF1 22628 106 - 1 CCCACCCAA-AACCCCAAUUAUAUUUAGACAACGCUU--UGGGUUG---UUGCAACGCCCACGCUUCUUUUU--GGAGCACCCUCAUCGGAUCUUGGGCUGAAAUAUGAUUAUA .........-......((((((((((.((((((.(..--.).))))---)).....(((((.(((((.....--)))))..((.....))....)))))..))))))))))... ( -27.70) >DroAna_CAF1 18796 100 - 1 -------------UCCAAUUAUAUUUAGACAGCCCGUCCUGGGCUGUGGCUGCAACGCCCACGCUUCUU-UUUGGGGGCACCCUCGAGUGAACUCGCUCUAAAAUAUGAUUAUA -------------...((((((((((..(((((((.....)))))))(((......)))...((((((.-...))))))......(((((....)))))..))))))))))... ( -34.40) >consensus CCCACCCAA_AACCCCAAUUAUAUUUAGACAACGCUU__UGCGUUG___UUGCAACGCCCACGCUUCUU_UU__GGAGCACCCUCAUCUGAUCUCGGGCUGAAAUAUGAUUAUA ................((((((((((...((((((.....))))))..........((((..(((((.......)))))....((....))....))))..))))))))))... (-23.53 = -23.62 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:28 2006