| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,618,901 – 14,619,000 |
| Length | 99 |
| Max. P | 0.618151 |
| Location | 14,618,901 – 14,619,000 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 92.08 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -18.86 |
| Energy contribution | -18.53 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14618901 99 - 23771897 UCAGUGCACCAUUAACACAGAAAUUAGGUUAAUAAUAUAUAUUGUGCAUUGUAGUUUCUGUAAGAAGUUGAAUCGAUUGUGUUUAAUUUCUUGA---AAAUG .........((((...((((((((((.(...(((((....)))))....).))))))))))((((((((((((.......))))))))))))..---.)))) ( -20.40) >DroSec_CAF1 17799 100 - 1 UCAAUGUACAAUUAACACAGAAAAUAGGUUAAUAAUAUAUAUAGUGCAUUGUAGUUUCUGUAAGAAGUUGAAUCGUUUG--UUUAAUUUCUUGAUCCGAAUG .((((((((.((((((.(........)))))))..((....))))))))))..((((...(((((((((((((.....)--))))))))))))....)))). ( -19.10) >DroSim_CAF1 13465 99 - 1 UCAAUGUACAAUUAACACAGAAAAUAGGUUAAUAAUAUAUAUAGUGCAUUGUAGUUUCUGUAAGAAGUUGAAUCGUUUGUGUUUAAUUUCUUGA---AAAUG .((((((((.((((((.(........)))))))..((....))))))))))..((((...(((((((((((((.......))))))))))))).---)))). ( -18.40) >consensus UCAAUGUACAAUUAACACAGAAAAUAGGUUAAUAAUAUAUAUAGUGCAUUGUAGUUUCUGUAAGAAGUUGAAUCGUUUGUGUUUAAUUUCUUGA___AAAUG .((((((((.((((((.(........))))))).((....)).))))))))..((((...(((((((((((((.......)))))))))))))....)))). (-18.86 = -18.53 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:27 2006