Locus 5287

Sequence ID 3L_DroMel_CAF1
Location 14,602,936 – 14,603,045
Length 109
Max. P 0.531129
window8361

overview

Window 1

Location 14,602,936 – 14,603,045
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 87.96
Mean single sequence MFE -24.30
Consensus MFE -15.59
Energy contribution -16.15
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.94
Structure conservation index 0.64
SVM decision value -0.00
SVM RNA-class probability 0.531129
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14602936 109 + 23771897
AACUCUUUCACGCGAUCUCGCCCCCUAAUAUGCCAUUACAAUUACUCAGUUCCUAGGGGCUACUCUUAGCCAUCGAGAGAUCAUCUCAAUUGCUUGGCGAUCUCAAAAA
...........(((....))).........(((((...(((((..............(((((....)))))...((((.....)))))))))..))))).......... ( -23.60)
>DroSec_CAF1 2009 109 + 1
AACUCUUUCACGCGAUCUCGCCCCCUAAUAUCCCAUAACAAUUUCUCAGUUCCUAGGGGCUACCAUUAGCCAUCGAGAGAUCAUCUCAGUUGCUUGGUGAUCUCAAAAA
...........(.((((..(((((...............................))))).((((..(((.((.((((.....)))).)).))))))))))).)..... ( -23.88)
>DroEre_CAF1 4820 103 + 1
AACUCUUUCACGCGAUCUCGCCCCAUAAUAUGCCAUAACAAUUACUCAGCUCCUAGGGGCUGCGCUUAACCAUCGAGAGAUCAGC------GCUUGGCGAUCUCAAAAU
...........(((....))).........(((((............(((((....)))))(((((.....(((....))).)))------)).))))).......... ( -26.00)
>DroYak_CAF1 4694 103 + 1
AACUCUUUCACGCGAUCUCGGUCCAUAAUACGCCAUAACAAUUACUCAGCUCCUAGGGGCUGCUCUUAACCAUCGAGAGAUCAUC------GCUUGGCGAUCUCAAAAC
.............(((((((((.........)))............((((((....))))))..............))))))(((------((...)))))........ ( -23.70)
>consensus
AACUCUUUCACGCGAUCUCGCCCCAUAAUAUGCCAUAACAAUUACUCAGCUCCUAGGGGCUACUCUUAACCAUCGAGAGAUCAUC______GCUUGGCGAUCUCAAAAA
...........(((....))).........(((((...........((((((....)))))).........(((....))).............))))).......... (-15.59 = -16.15 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:25 2006