Locus 5286

Sequence ID 3L_DroMel_CAF1
Location 14,599,547 – 14,599,644
Length 97
Max. P 0.582116
window8360

overview

Window 0

Location 14,599,547 – 14,599,644
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 95.19
Mean single sequence MFE -18.75
Consensus MFE -18.36
Energy contribution -18.03
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.43
Structure conservation index 0.98
SVM decision value 0.10
SVM RNA-class probability 0.582116
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14599547 97 - 23771897
ACGAUGCUCUACUGUAUGCCCGCGCUCUUCUCAUUUUAUUUCCUUUUUUUGUUCAUCAAAAAGGAAUUUCUUGAGAUUUUUCGCUGCGGCUGCUCCU
...((((......))))((((((((...(((((......(((((((((.........))))))))).....)))))......)).))))..)).... ( -22.70)
>DroEre_CAF1 1309 97 - 1
ACGAUGCUCUACUGUAUGCCUGCGCUCUUCCCGUUUUAUUUCCCUUUUUUGUUCAUCGAAAAGGAAUUUCUUGAGAUUUUUCGUUGCGGCUGCUUCU
...((((......))))(((.(((........((((((.((((..((((((.....)))))))))).....)))))).......))))))....... ( -14.46)
>DroYak_CAF1 1118 97 - 1
ACGAUGCUCUACUGUAUGCCUGCGCUCUUCUCGUUUUAUUUCCCUUUUUUGUUCAUCAAAAAGGAAUUUCUUGAGAUUUUUCGUUGCGGCUGCUUCU
...((((......))))(((.(((....(((((......((((..((((((.....)))))))))).....))))).....)))...)))....... ( -19.10)
>consensus
ACGAUGCUCUACUGUAUGCCUGCGCUCUUCUCGUUUUAUUUCCCUUUUUUGUUCAUCAAAAAGGAAUUUCUUGAGAUUUUUCGUUGCGGCUGCUUCU
...((((......))))(((.(((....(((((......((((..((((((.....)))))))))).....))))).....)))...)))....... (-18.36 = -18.03 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:24 2006