Locus 5285

Sequence ID 3L_DroMel_CAF1
Location 14,589,085 – 14,589,191
Length 106
Max. P 0.916167
window8359

overview

Window 9

Location 14,589,085 – 14,589,191
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 85.22
Mean single sequence MFE -37.22
Consensus MFE -32.01
Energy contribution -31.47
Covariance contribution -0.55
Combinations/Pair 1.43
Mean z-score -2.28
Structure conservation index 0.86
SVM decision value 1.11
SVM RNA-class probability 0.916167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14589085 106 - 23771897
ACGAGGGUGGUUGGUGCUUGGGGGAGUUUUCUAGGCGACUCCCUUAGGGGUUGUUGGUAAAUUCAAUGCCAAAGCAAUUGGCCAAGGCUCGUCGGGAUUUACCAUG
(((((..((((..((((((.((.((((((.((((.(((((((....))))))))))).))))))....)).)))).))..))))...))))).((......))... ( -40.70)
>DroSec_CAF1 4379 106 - 1
ACGAGGGUGGUUGGUGCUUGGGGGAGUUUUCUAGGCGACUCCCUUAGGGGUUGUUGGUAAAUUCAAUGCCAAAGCAAUUGGCCAAGGCUCGUCGGGAUUUAUUAUG
(((((..((((..((((((.((.((((((.((((.(((((((....))))))))))).))))))....)).)))).))..))))...))))).............. ( -38.40)
>DroSim_CAF1 4432 106 - 1
ACGAGGGUGGUUGGUGCUUGGGGGAGUUUUCUAGGCGACUCCCUUAGGGGUUGUUGGUAAAUUCAAUGCCAAAGCAAUUGGCCAAGGCUCGUCGGGAUUUACCAUG
(((((..((((..((((((.((.((((((.((((.(((((((....))))))))))).))))))....)).)))).))..))))...))))).((......))... ( -40.70)
>DroEre_CAF1 4430 106 - 1
UUGAGGGUGACUGAUGAUUGGGGGAGUUUUCUAAGCGACUCCCCUGGGGGUUGUUGGUAAAUUCAAUGCCAAAGCAAUUGGCCAAGGCUCGUCGGGAUUUACCAUG
.....(((((((((((((..((((((((........))))))))..).(((((((((((.......)))))..)))))).((....)))))))))...)))))... ( -38.00)
>DroYak_CAF1 4332 106 - 1
AUGAGGGUGGCUGGUGUUUGGGGGAGUUUUCUAGGCGACUUCCUUAGGGGUUGUUAGUGAAUUCAAUGCCAAAGCAAUUGGCCAAGGCUCGUCGGGAUUUGCCAUG
(((((..((((..((((((.((.((((((.((((.(((((((....))))))))))).))))))....)).)))).))..))))...))))).((......))... ( -34.90)
>DroPer_CAF1 10112 98 - 1
--UGGGGUAGUUGAUGUUAGGG---GUUGCCUAG-CAGCCCGAACGGGGGUUGUUGGCGAAUUCAAUGCCAAAGCUAUUGGGUAAGGCUUGUAGGGAUUUCC-AG-
--((((.............(((---.(((((.((-((((((......))))))))))))).)))(((.((.(((((.........)))))...)).))))))-).- ( -30.60)
>consensus
ACGAGGGUGGUUGGUGCUUGGGGGAGUUUUCUAGGCGACUCCCUUAGGGGUUGUUGGUAAAUUCAAUGCCAAAGCAAUUGGCCAAGGCUCGUCGGGAUUUACCAUG
.((((..((((..((((((.((.((((((.((((.(((((((....))))))))))).))))))....)).)))).))..))))...))))..((......))... (-32.01 = -31.47 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:23 2006