| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,586,937 – 14,587,073 |
| Length | 136 |
| Max. P | 0.908323 |
| Location | 14,586,937 – 14,587,039 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 95.84 |
| Mean single sequence MFE | -18.36 |
| Consensus MFE | -18.68 |
| Energy contribution | -18.44 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.19 |
| Structure conservation index | 1.02 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.879644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14586937 102 + 23771897 AGUAAAAUUAAUGUAAAAUAUGCUUAGGUUUCUACACAUAUCUGUAUACAUA----UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCU .......................(((((((.............((((((((.----...)))))))).........((((((......)))))).---))))))).... ( -17.50) >DroSec_CAF1 2268 102 + 1 AGUAAAAUUAAUGUAAAAUAUGCUUAGGUUUCUACACAUAUCUGUAUACAUA----UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCU .......................(((((((.............((((((((.----...)))))))).........((((((......)))))).---))))))).... ( -17.50) >DroSim_CAF1 2268 105 + 1 AGUAAAAUUAAUGUAAAAUAUGCUUAGGUUUCUACACAUAUCUGUAUACAUA----UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGCAUCAGCCUAGUCCU .......................(((((((.............((((((((.----...)))))))).........((((((......))))))....))))))).... ( -17.50) >DroEre_CAF1 2285 105 + 1 AGUAAAAUUAAUGUAAAAUAUGCUUAGGUUUCUACACAUAUCUGUAUGCAUAUU-AUGUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCU .......................(((((((.............((((((((((.-..)))))))))).........((((((......)))))).---))))))).... ( -19.10) >DroYak_CAF1 2216 106 + 1 AGUAAAAUUAAUGUAAAAUAUGCUUAGGUUUCUACACAUAUCUGUAUGCAUAUUAAUAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCU .......................(((((((.............((((((((((....)))))))))).........((((((......)))))).---))))))).... ( -20.20) >consensus AGUAAAAUUAAUGUAAAAUAUGCUUAGGUUUCUACACAUAUCUGUAUACAUA____UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC___AGCCUAGUCCU .......................(((((((.............(((((((((......))))))))).........((((((......))))))....))))))).... (-18.68 = -18.44 + -0.24)
| Location | 14,586,966 – 14,587,073 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 95.30 |
| Mean single sequence MFE | -17.56 |
| Consensus MFE | -18.12 |
| Energy contribution | -17.88 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.20 |
| Structure conservation index | 1.03 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14586966 107 + 23771897 UUCUACACAUAUCUGUAUACAUA----UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCUGUGAAGCAAUCAAAAAAGAGCUAAACCAAUUAAA .....((((...((((((((((.----...)))))))).........((((((......)))))).---.....))...)))).(((..((......)))))............ ( -16.70) >DroSec_CAF1 2297 107 + 1 UUCUACACAUAUCUGUAUACAUA----UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCUGUGAAGCAAUCAAAAAAGAGCUAAACCAAUUAAA .....((((...((((((((((.----...)))))))).........((((((......)))))).---.....))...)))).(((..((......)))))............ ( -16.70) >DroSim_CAF1 2297 110 + 1 UUCUACACAUAUCUGUAUACAUA----UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGCAUCAGCCUAGUCCUGUGAAGCAAUCAAAAAAGAGCUAAACCAAUUAAA .....((((...((((((((((.----...)))))))).........((((((......)))))).........))...)))).(((..((......)))))............ ( -16.70) >DroEre_CAF1 2314 110 + 1 UUCUACACAUAUCUGUAUGCAUAUU-AUGUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCUGUGAAGCAAUCAAAAAAGAGCUAAACCAAUUAAC .....((((...((((((((((((.-..)))))))))).........((((((......)))))).---.....))...)))).(((..((......)))))............ ( -18.30) >DroYak_CAF1 2245 111 + 1 UUCUACACAUAUCUGUAUGCAUAUUAAUAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC---AGCCUAGUCCUGUGAAGCAAUCAAAUAAGAGCUAAACCAAUUAAA .....((((...((((((((((((....)))))))))).........((((((......)))))).---.....))...)))).(((..((......)))))............ ( -19.40) >consensus UUCUACACAUAUCUGUAUACAUA____UAUAUGUAUAUCCUUUAUCCCUGAUGAGCCAGCAUCAGC___AGCCUAGUCCUGUGAAGCAAUCAAAAAAGAGCUAAACCAAUUAAA .....((((...(((((((((((......))))))))).........((((((......)))))).........))...)))).(((..((......)))))............ (-18.12 = -17.88 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:22 2006