| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,585,123 – 14,585,233 |
| Length | 110 |
| Max. P | 0.877939 |
| Location | 14,585,123 – 14,585,233 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 72.34 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.12 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14585123 110 - 23771897 UUGGCACAUUGGAGGGCAUCACCUCCAGCACUAUGUCGCCAUAUUGUCUGUUCAAAUCUAGAAUG--UACAUUUAAGAUAAUAGAAAUAGAUUAUUAAAAUACUUGAGUUAC------ .((((((((((((((......)))))).....)))).))))((((.((((((...((((.((((.--...)))).)))))))))))))).......................------ ( -25.40) >DroSec_CAF1 419 109 - 1 UGGGCACAUUGGAGGGCAUCACCUCCAGCACUAUGUCGCCAUAUUGUCUGUUCAAAUCUAGAAUG--UACAUUUAAGGUAA-AGAAAUAGAUUAUUAAAAUACUUUAGUUAC------ ..(((((((((((((......)))))).....)))).))).....((((((((..((((.((((.--...)))).))))..-.).)))))))....................------ ( -24.10) >DroSim_CAF1 432 109 - 1 UGGGCACAUUCGAGGGCAUCACCUCCAGCACUAUGUCACCAUAUUGUCUGUUCAAAUCUAUAAUG--UACAUUUAAGGUAC-CGAAAUAGAUUAUUAAAAUACUUCAGUUAC------ ((((((.....((((......))))..(((.((((....)))).))).))))))(((((((...(--(((.......))))-....)))))))...................------ ( -20.30) >DroEre_CAF1 481 114 - 1 UGGGCACAUUGGAGGGCAUCACCUCCAGCACUAUGUCACCAUACUGCCUGUUCAGAUCUGGAAUG--UACAUUUACAAUUC-AGAAAUAUAUUAUCAAAAUAUUU-AGCCACAUAACU ..((((((.((((((......))))))(((.((((....)))).))).))).....((((((.((--((....)))).)))-)))....................-.)))........ ( -29.40) >DroYak_CAF1 470 97 - 1 UGGGCACAUUGGAGGGCAUCACCUCCAGCACUAUGUCGCCAUAUUGUCUGUUCAGAUCUAGAAUG--UACGU----------------AUAUUUUU--AAUACUU-AGCAACUUAAUC ..(((((((((((((......)))))).....)))).))).....((.((((.((((..((((((--(....----------------))))))).--.)).)).-))))))...... ( -22.80) >DroAna_CAF1 307 91 - 1 UUGGUACGUUCGAAGGCAUUACCUCCAGUACUAUGUCGCCGUACUGCCUAUUGAGAUCUAACAGAUUUUGUUUAAAGAUUA-AUAAGAAGAU-------------------------- ..((((.((.((..((((((((.....)))..)))))..)).))))))....((((((.....))))))............-..........-------------------------- ( -14.60) >consensus UGGGCACAUUGGAGGGCAUCACCUCCAGCACUAUGUCGCCAUAUUGUCUGUUCAAAUCUAGAAUG__UACAUUUAAGAUAA_AGAAAUAGAUUAUUAAAAUACUU_AGUUAC______ ((((((...((((((......))))))(((.((((....)))).))).))))))................................................................ (-14.45 = -14.12 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:20 2006