Locus 5281

Sequence ID 3L_DroMel_CAF1
Location 14,579,613 – 14,579,704
Length 91
Max. P 0.833278
window8353

overview

Window 3

Location 14,579,613 – 14,579,704
Length 91
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 94.71
Mean single sequence MFE -26.46
Consensus MFE -23.20
Energy contribution -23.52
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 0.72
SVM RNA-class probability 0.833278
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14579613 91 - 23771897
UU-UUUGAAUGGGGGAAAUGCUG-----AGCCGAGCCCAACGCACACACACACACCAGCGCACGAUUGCUCGGCACUCACGCACACACUCUCAUUUA
..-..((((((((((...(((((-----((((((((....(((..............))).......)))))))..))).)))....)))))))))) ( -28.24)
>DroSec_CAF1 54411 92 - 1
UUUUUUGAAUGGGGGAAAUGCUG-----AGCCGAGCCCAACGCACACACACACACCAGCGCACGAUUGCUCGGCACUCACGCACACACUCUCACUUA
.........((((((...(((((-----((((((((....(((..............))).......)))))))..))).)))....)))))).... ( -24.54)
>DroSim_CAF1 56341 92 - 1
UUUUUUGAAUGGGGGAAAUGCUG-----AGCCGAGCCCAACGCACACACACACACCAGCGCACGAUUGCUCGGCACUCACGCACACACUCUCAUUUG
......(((((((((...(((((-----((((((((....(((..............))).......)))))))..))).)))....))))))))). ( -27.94)
>DroEre_CAF1 54307 97 - 1
UUUUUUGAAUGGGGGAAAUGCUGAGCUGAGCCGAGCCCAACGCACACACACACACCAGCGCACGAUCGCUCGGCACUCACGCACACACUAUCAUUUA
.....((((((..((...(((((((....(((((((....(((..............))).......))))))).)))).)))....))..)))))) ( -25.14)
>consensus
UUUUUUGAAUGGGGGAAAUGCUG_____AGCCGAGCCCAACGCACACACACACACCAGCGCACGAUUGCUCGGCACUCACGCACACACUCUCAUUUA
.....((((((((((...(((((......(((((((....(((..............))).......)))))))...)).)))....)))))))))) (-23.20 = -23.52 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:18 2006