| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,553,020 – 1,553,113 |
| Length | 93 |
| Max. P | 0.989918 |
| Location | 1,553,020 – 1,553,113 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 97.13 |
| Mean single sequence MFE | -19.12 |
| Consensus MFE | -18.91 |
| Energy contribution | -18.73 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.99 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1553020 93 + 23771897 AAUUUGCAACUGUGAAAACGCUCUAAAGCGUGGAGAGUUGCAUUUGAAAAAAGGUAAUUAGCGUACCAAUUAAAAAAGGAAUUGUUCAGUUUG ....(((((((.(....(((((....)))))..).))))))).(((((....((((.......))))((((........)))).))))).... ( -18.60) >DroSec_CAF1 10733 93 + 1 AAUUUGCAACUGAGAAAACGCUUGAAAGCGUGGAGAGUUGCAUUUGAAAAAAGGUAAUUAGCGUACCAAUUAAAAAAGGAAUCGUUCGGUUUG ....(((((((......(((((....)))))....)))))))..........((((.......))))...........(((((....))))). ( -19.30) >DroSim_CAF1 10841 93 + 1 AAUUUGCAACUGUGAAAACGCUUGAAAGCGUGGAGAGUUGCAUUUGAAAAAAGGUAAUUAGCGUACCAAUUAAAAAAGGAAUCGUUCGGUUUG ....(((((((.(....(((((....)))))..).)))))))..........((((.......))))...........(((((....))))). ( -20.20) >DroYak_CAF1 11596 93 + 1 AAUUUGCAACUGUGAAAACGCUUGAAAGCGUGGAGAGUUGCAUUUGAAAAAAGGUAAUUAGCGUACCAAUUAAAAAAGGAAUUGUUCGGUUUG ....(((((((.(....(((((....)))))..).)))))))..........((((.......))))...........(((((....))))). ( -18.40) >consensus AAUUUGCAACUGUGAAAACGCUUGAAAGCGUGGAGAGUUGCAUUUGAAAAAAGGUAAUUAGCGUACCAAUUAAAAAAGGAAUCGUUCGGUUUG ....(((((((.(....(((((....)))))..).)))))))..........((((.......))))...........(((((....))))). (-18.91 = -18.73 + -0.19)
| Location | 1,553,020 – 1,553,113 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 97.13 |
| Mean single sequence MFE | -17.45 |
| Consensus MFE | -17.45 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.20 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.989918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1553020 93 - 23771897 CAAACUGAACAAUUCCUUUUUUAAUUGGUACGCUAAUUACCUUUUUUCAAAUGCAACUCUCCACGCUUUAGAGCGUUUUCACAGUUGCAAAUU .....................(((((((....)))))))............(((((((....(((((....)))))......))))))).... ( -17.60) >DroSec_CAF1 10733 93 - 1 CAAACCGAACGAUUCCUUUUUUAAUUGGUACGCUAAUUACCUUUUUUCAAAUGCAACUCUCCACGCUUUCAAGCGUUUUCUCAGUUGCAAAUU .....................(((((((....)))))))............(((((((....(((((....)))))......))))))).... ( -17.40) >DroSim_CAF1 10841 93 - 1 CAAACCGAACGAUUCCUUUUUUAAUUGGUACGCUAAUUACCUUUUUUCAAAUGCAACUCUCCACGCUUUCAAGCGUUUUCACAGUUGCAAAUU .....................(((((((....)))))))............(((((((....(((((....)))))......))))))).... ( -17.40) >DroYak_CAF1 11596 93 - 1 CAAACCGAACAAUUCCUUUUUUAAUUGGUACGCUAAUUACCUUUUUUCAAAUGCAACUCUCCACGCUUUCAAGCGUUUUCACAGUUGCAAAUU .....................(((((((....)))))))............(((((((....(((((....)))))......))))))).... ( -17.40) >consensus CAAACCGAACAAUUCCUUUUUUAAUUGGUACGCUAAUUACCUUUUUUCAAAUGCAACUCUCCACGCUUUCAAGCGUUUUCACAGUUGCAAAUU .....................(((((((....)))))))............(((((((....(((((....)))))......))))))).... (-17.45 = -17.45 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:20 2006