Locus 5279

Sequence ID 3L_DroMel_CAF1
Location 14,577,922 – 14,578,032
Length 110
Max. P 0.769238
window8350

overview

Window 0

Location 14,577,922 – 14,578,032
Length 110
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 87.57
Mean single sequence MFE -22.72
Consensus MFE -15.76
Energy contribution -15.76
Covariance contribution -0.00
Combinations/Pair 1.18
Mean z-score -2.25
Structure conservation index 0.69
SVM decision value 0.52
SVM RNA-class probability 0.769238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14577922 110 + 23771897
CUAGGAAGAUUAAAUUUUUCGCAUGAUUCUUAUAUCAACAAGGUACAUAUCCUGUAGCCCAUCAGAUCUUCGUCUUGGAU---CUCUAGACCUAAAUGCACACAACCAUGCAC
.((((((((((............((((......))))....((((((.....))).))).....)))))))((((.((..---..)))))))))..((((........)))). ( -19.20)
>DroSec_CAF1 52699 110 + 1
CUAGGAAGAUUACAUUUUCCGCGUGAUUCUUAUAUCAACAAGGUAUAUAUCCUGCACCCCGUCAGAUAUUCGU---GGAUCUUCUCUAGCCCUAAAUGCACACAACCAUGCAU
(((((((((........((((((.(((...((((((.....)))))).)))((((.....).))).....)))---)))))))).))))......(((((........))))) ( -23.80)
>DroSim_CAF1 54635 110 + 1
CUAGGAAGAUUACAUUUUCCGCAUGAUUCUUAUAUCAACAAGGUAUAUAUCCUGUACCCCGUCAGAUCUUCGU---GGAUCUUCUCUAGCCCUAAAUGCACACAACCAUGCAC
(((((((((........(((((.((((......))))....((((((.....)))))).............))---)))))))).)))).......((((........)))). ( -23.40)
>DroEre_CAF1 52547 108 + 1
CCAGGAAUAUUGCAUUUUCCGCAUGAU-CUUAUAUCAACAAGGUACAUAUCCUGUACCCCC-CAGAUCUACGCCUUGGAU---CUCUAUUCCUAAAUGCAGACAACCAUGCAC
..(((((((.(((.......)))((((-.....))))....((((((.....))))))...-.(((((((.....)))))---)).)))))))...((((........)))). ( -24.20)
>DroYak_CAF1 54413 110 + 1
CUAGGAAUAUUACAUUUUCCGCAUGAUUCUUAUAUGAACAAGGUACAUAUCCUGUACCCCCUUAGAUCUACGCCUUGGAU---CUCUAUCCCUAAAUGCAGACAACCAUGCAC
...((((.........))))(((((................((((((.....)))))).....(((((((.....)))))---)).....................))))).. ( -23.00)
>consensus
CUAGGAAGAUUACAUUUUCCGCAUGAUUCUUAUAUCAACAAGGUACAUAUCCUGUACCCCCUCAGAUCUUCGUCUUGGAU___CUCUAGCCCUAAAUGCACACAACCAUGCAC
...(((((((...)))))))(((((................((((((.....)))))).............((...((............)).....)).......))))).. (-15.76 = -15.76 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:15 2006