Locus 5276

Sequence ID 3L_DroMel_CAF1
Location 14,572,794 – 14,572,902
Length 108
Max. P 0.971469
window8344

overview

Window 4

Location 14,572,794 – 14,572,902
Length 108
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.46
Mean single sequence MFE -27.48
Consensus MFE -8.66
Energy contribution -10.58
Covariance contribution 1.92
Combinations/Pair 1.33
Mean z-score -3.06
Structure conservation index 0.32
SVM decision value 1.68
SVM RNA-class probability 0.971469
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14572794 108 - 23771897
AUUCCGAG-GCUAUGAAAAA-AUUGGGGGUGUGGCAUUCGGAAAAUACCCCUUUUU-CACAAUCCGCAUUACAUACCC-CCGGCUUACUCAAAGCAAAGCCA-A----AAAAACCAC
.......(-(((........-..((((((((((..((.((((..............-.....)))).))..)))))))-)))((((.....))))..)))).-.----......... ( -31.51)
>DroSec_CAF1 47670 109 - 1
AUUCCGAG-GCUAUGAAAAA-AUUGGGGGUGUGGCGUUCGGAAAAUACCCCUUUUU-CACAAUCCGCAUUACACACCCCCCAGCUUACCCAAUGCAAAGCCA-A----AAAAACCAC
.......(-(((........-...(((((((((..((.((((..............-.....)))).))..)))))))))..((.........))..)))).-.----......... ( -30.51)
>DroSim_CAF1 49607 109 - 1
AUUCCGAG-GCUAUGAAAAA-AUUGGGGGUGUGGCGUUCGGAAAAUACCCCUUUUU-CACAAUCCGCAUUACACACCCCCCAGCUUACCCAAAGCAUAGCCA-A----AAAAACCAC
.......(-(((((......-...(((((((((..((.((((..............-.....)))).))..)))))))))..((((.....)))))))))).-.----......... ( -35.21)
>DroEre_CAF1 47232 110 - 1
AUUCCGAGGGAUAUGAAAAA-AUUGGUGGAAUGGGGUACGGAAAAAACCCCUUCUU-CACAAUCCGCAUUACACACCA-CCAGCGGACCCAAACCAAAGCCACA----AAAAACCAC
.......(((..........-....(((((..(((((.........)))))...))-)))..(((((...........-...))))))))..............----......... ( -24.64)
>DroYak_CAF1 49094 111 - 1
AUUCCGAGGGAUAUGAAAAAAAUGGGUGGAGUGGGUUUCGGAAAAAACCCCUUCUU-CACAAUCCGCUUUACACACCC-CCAGCAAACUCGAACCAAAGCCGCA----AAAAACCAC
....((((((((.(....)......((((((.((((((......))))))...)))-))).))))(((..........-..)))...)))).............----......... ( -23.00)
>DroAna_CAF1 44547 107 - 1
AUUCAGGG-GGUGUACAAAA-UACAAAAAUAU---A-UACGAAUAUACCCCUUUUUAUACAAAUCGUAUUGCAAAGCCUUGUGCU----CCUUCCCCCGGCACAAAACAUGAACCAC
.....(((-((.((((((..-........(((---(-(....)))))...((((..((((.....))))...))))..)))))).----....)))))((..((.....))..)).. ( -20.00)
>consensus
AUUCCGAG_GCUAUGAAAAA_AUUGGGGGUGUGGCGUUCGGAAAAUACCCCUUUUU_CACAAUCCGCAUUACACACCC_CCAGCUUACCCAAACCAAAGCCA_A____AAAAACCAC
......................(((((((((((.....((((....................)))).....))))))).)))).................................. ( -8.66 = -10.58 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:10 2006