| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,571,725 – 14,571,818 |
| Length | 93 |
| Max. P | 0.550300 |
| Location | 14,571,725 – 14,571,818 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.81 |
| Mean single sequence MFE | -18.75 |
| Consensus MFE | -10.12 |
| Energy contribution | -10.52 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14571725 93 + 23771897 ACUUUGCCAACCAUUCCAAGUUCCUUGACUUGGCAAAAUUUACAACCA-----------------UAUAUGGUAGAUGCUUCUGCCAUUGGCCCAUAACUCAGUCGGUUU ........((((...(((((((....)))))))............(((-----------------...((((((((....)))))))))))..............)))). ( -22.60) >DroSec_CAF1 46605 92 + 1 ACUUUGCUAACCAUUCCAAGUUCCUUGACUUGGCAAAAUUUACAACCA-----------------UAUAUGUUAGAUGCUUUUGCCU-UGGCCCAUAACUCAGUCGGUUU ........((((...(((((((....)))))))...............-----------------.....((((...(((.......-.)))...))))......)))). ( -15.10) >DroSim_CAF1 48554 92 + 1 ACUUUGCCAACCAUUCCAAGUUCCUUGACUUGGCAAAAUUUACAGCCA-----------------UAUAUGGUAGAUGCUUCUGCCA-UGGCCCAUAACUCAGUCGGUUU ........((((...(((((((....)))))))...........((((-----------------....(((((((....)))))))-)))).............)))). ( -24.60) >DroEre_CAF1 46190 91 + 1 ACUUUGCCAAGCAUUUCAAGUUUCUUGACUUGGCAUAAUUUACAGCCA-----------------UAUAUGGUAGAUGCU-CUGCCA-UGCCCCAUAACUCAGUCGAUUC ....(((((((....(((((...)))))))))))).............-----------------..((((((((.....-))))))-)).................... ( -21.80) >DroYak_CAF1 48023 88 + 1 ACUUAGCCAACCAUUCUAAGUUUCUUGACUUGGCAUAAUUUACAGCCU-----------------UAUAUGGUAGAUGCUUCUGCCU-UGCCCCAUAACUCAGUUG---- .......((((....(((((((....)))))))...............-----------------.....((((((....)))))).-..............))))---- ( -15.20) >DroAna_CAF1 43612 103 + 1 ACUUUGCCAACUAUUCUAAGUUCCUUGACUUGGCUUAAUAUAUAUCUAUGCUAUAUACAUACACGUAUAUAUUAGAAGACUC-CCCA-UAACCCAUAACUCAGUC----- .((((..........(((((((....)))))))..((((((((((.((((.......))))...))))))))))))))....-....-.................----- ( -13.20) >consensus ACUUUGCCAACCAUUCCAAGUUCCUUGACUUGGCAAAAUUUACAGCCA_________________UAUAUGGUAGAUGCUUCUGCCA_UGGCCCAUAACUCAGUCGGUUU ..........(((..(((((((....))))))).....................................((((((....))))))..)))................... (-10.12 = -10.52 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:09 2006