Locus 5274

Sequence ID 3L_DroMel_CAF1
Location 14,570,325 – 14,570,440
Length 115
Max. P 0.551897
window8342

overview

Window 2

Location 14,570,325 – 14,570,440
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 95.99
Mean single sequence MFE -18.66
Consensus MFE -15.82
Energy contribution -16.02
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.85
SVM decision value 0.04
SVM RNA-class probability 0.551897
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14570325 115 + 23771897
AAAUCGCAGCCAAUAGGGCGCUUUCCAAUCGCCAAUCGCCCGUCACAAAUAAAAAGCAAUGCGCUGCUUGUUUAAAACAAAGAAAAUUGCCAUUGUAAAUAAAAUAAAAAAAAAA
.....(((((.....(((((.((..(....)..)).)))))..............((...)))))))((((((...((((.(........).))))))))))............. ( -18.00)
>DroSec_CAF1 44485 112 + 1
AAAUCGCAGCCAAUCGGGCGCUUUCCAAUCGCCAAUCGCCCGUCACAAAUAAAAAGCAAUGCGCUGCUUGUUUAAAACAAAGAAAAUUGCCAUUGUAAAUAAAAUAAGAAAA---
...(((((((....((((((.((..(....)..)).)))))).............((...)))))))((((((...((((.(........).)))))))))).....))...--- ( -19.50)
>DroSim_CAF1 46433 112 + 1
AAAUCGCAGCCAAUCGGGCGCUUUCCAAUCGCCAAUCGCCCGUCACAAAUAAAAAGCAAUGCGCUGCUUGUUUAAAACAAAGAAAAUUGCCAUUGUAAAUAAAAUAAGAAAA---
...(((((((....((((((.((..(....)..)).)))))).............((...)))))))((((((...((((.(........).)))))))))).....))...--- ( -19.50)
>DroEre_CAF1 44856 114 + 1
AAAUCGCAGCCAAUCGGGCGCUUUCCAAUCGCCAAUCGCCCGUCACAAAUAAAAAGCAAUGCGCUGCUUGUUUAAAACAAAGAAAAUUGCCAUUGUAAAUAAAAUAAAAAA-UAA
.....(((((....((((((.((..(....)..)).)))))).............((...)))))))((((((...((((.(........).)))))))))).........-... ( -19.20)
>DroYak_CAF1 46948 114 + 1
AAAUCGCAGCCAAUCGGGCGCUUUCCAAUCGCCAAUCGCCCGUCACAAAUAAAAAGCAAUGCCCUUCUUGUUUAAAACAAAGAAAAUUGCCAUUGUAAAUAAAAUAAGAAA-UGA
.....((((.....((((((.((..(....)..)).)))))).............(((((....(((((((.....)).))))).)))))..))))...............-... ( -17.10)
>consensus
AAAUCGCAGCCAAUCGGGCGCUUUCCAAUCGCCAAUCGCCCGUCACAAAUAAAAAGCAAUGCGCUGCUUGUUUAAAACAAAGAAAAUUGCCAUUGUAAAUAAAAUAAGAAAA__A
.(((.((((......(((((.((..(....)..)).)))))((...((((((..(((.....)))..))))))...))........)))).)))..................... (-15.82 = -16.02 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:08 2006