Locus 5271

Sequence ID 3L_DroMel_CAF1
Location 14,561,125 – 14,561,232
Length 107
Max. P 0.546562
window8337

overview

Window 7

Location 14,561,125 – 14,561,232
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.69
Mean single sequence MFE -36.30
Consensus MFE -22.90
Energy contribution -22.74
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -1.22
Structure conservation index 0.63
SVM decision value 0.03
SVM RNA-class probability 0.546562
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14561125 107 + 23771897
----------CUAA---CAAGCUGCAAUAUACUUACUCGUGUUGGAGAGCCGUUCGCGCCACGCGAUGGGAUUGGCCACCAGUCCCUGUAAUCCUGGCCAGUACAGGUGCGUGCGGUCCA
----------....---....((.((((((........)))))).)).(((((.((((((.......((((((((...))))))))((((...((....)))))))))))).)))))... ( -37.60)
>DroVir_CAF1 40681 116 + 1
AUAUAUCUGGCCAG---CCAGCUAU-AUUCACUUACUUGUAUUCGAUAGACGCUCCCGCCACGCUAUCGGAUUGGCCACCAGACCCUGCAGUCCGGGCCAGUACAGAUGCGUGCGAUCCA
(((((.((((....---)))).)))-))............................(((.((((.(((..(((((((....(((......)))..)))))))...))))))))))..... ( -34.50)
>DroPse_CAF1 37881 98 + 1
----------------------UGGUAGGUACUCACUCGUAUUGGAUAGACGCUCUCGCCACGCUAUCGGAUUGGCCACCAGGCCCUGCAGUCCCGGCCAGUACAGGUGAGUGCGGUCCA
----------------------.((...((((((((..(((((((((((..((....))....)))))(((((((((....))))....)))))....))))))..))))))))...)). ( -40.40)
>DroWil_CAF1 184023 105 + 1
-----------UAAAUUCAAGGU----UUCACUUACUUGUAUUGGAGAGACGUUCGCGCCACGCUAUGGGAUUGGCCACCAGGCCCUGUAAACCGGGCCAAUAAAGAUGCGUACGAUCCA
-----------..(((.((((..----........)))).)))(((....(((.(((((((..(.....)..)))).....(((((.(....).))))).........))).))).))). ( -29.10)
>DroAna_CAF1 33449 94 + 1
----------C----------------ACUACUUACUCGUGUUGGAGAGCCGCUCGCGCCACGCAAUCGGAUUGGCCACCAGUCCCUGCAGUCCGGGCCAGUACAGGUGCGUGCGGUCCA
----------(----------------(.(((......))).))..(..((((.((((((..(((...(((((((...))))))).))).((.(......).)).)))))).))))..). ( -35.80)
>DroPer_CAF1 41168 98 + 1
----------------------UGGUAGGUACUCACUCGUAUUGGAUAGACGCUCUCGCCACGCUAUCGGAUUGGCCACCAGGCCCUGCAGUCCCGGCCAGUACAGGUGAGUGCGGUCCA
----------------------.((...((((((((..(((((((((((..((....))....)))))(((((((((....))))....)))))....))))))..))))))))...)). ( -40.40)
>consensus
______________________UG__AUGUACUUACUCGUAUUGGAGAGACGCUCGCGCCACGCUAUCGGAUUGGCCACCAGGCCCUGCAGUCCGGGCCAGUACAGGUGCGUGCGGUCCA
..........................................((((....(((.((((((.(......).(((((((..................)))))))...)))))).))).)))) (-22.90 = -22.74 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:03 2006