| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,559,519 – 14,559,609 |
| Length | 90 |
| Max. P | 0.972872 |
| Location | 14,559,519 – 14,559,609 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 92.73 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -16.71 |
| Energy contribution | -17.53 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14559519 90 + 23771897 GUUUCAGCUAGAUAAUAAUGUGGCAACAUAUUCUCACAGCGUCUGUGUCUGCCUUUAUCUUCCUAUAUACAUUAUAUAUGUAUAUAUACA-- .....((..((((((.((((((....))))))..(((((...))))).......))))))..))((((((((.....)))))))).....-- ( -20.00) >DroSec_CAF1 33668 92 + 1 GUUUCAGCUAGAUAAUAAUGUGGCAACAUAUUCUCGCAGCGUCUGUGUCUGCCUUUAUCUUCCUAUAUACAUUAUAUAUGUAUAUAUACGUA .....((..((((((.((((((....))))))...((((((....)).))))..))))))..))((((((((.....))))))))....... ( -21.00) >DroSim_CAF1 34870 92 + 1 GUUUCAGCUAGAUAAUAAUGUGGCAACAUAUUCUCGCAGCGUCUGUGUCUGCCUUUAUCUUCCUAUAUACAUUAUAUAUGUAUAUAUACAUA .....((..((((((.((((((....))))))...((((((....)).))))..))))))..))((((((((.....))))))))....... ( -21.00) >DroEre_CAF1 33887 82 + 1 GUUUCAGCUAGAUAAUAAUGUGGCAACAUAUUCUCGCAGCGUCUGUGUCUGCCUUUAUCUUCCUAUAUACAUUAUAUAUAUA---------- .....((..((((((.((((((....))))))...((((((....)).))))..))))))..))..................---------- ( -15.20) >consensus GUUUCAGCUAGAUAAUAAUGUGGCAACAUAUUCUCGCAGCGUCUGUGUCUGCCUUUAUCUUCCUAUAUACAUUAUAUAUGUAUAUAUACA__ .....((..((((((.((((((....))))))..(((((...))))).......))))))..))((((((((.....))))))))....... (-16.71 = -17.53 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:02 2006