Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,552,880 – 1,552,986 |
Length | 106 |
Max. P | 0.547627 |
Location | 1,552,880 – 1,552,986 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 87.03 |
Mean single sequence MFE | -29.33 |
Consensus MFE | -21.75 |
Energy contribution | -22.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.74 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1552880 106 + 23771897 CCGCUGUAGGCCAUUC-UUUUAGCCCCAAACAAGAGCGACGACGUCAGUGGGCGACGCGACUGGCGUCAGGUGAAAAAAA----GAAAGAAAAACGUA---UUGAGAUUUGAAA .(...(((.(...(((-((((.(((........).))...(((((((((.(......).)))))))))............----)))))))...).))---)...)........ ( -22.50) >DroSec_CAF1 10589 110 + 1 CCGAUUUAGGCCAUUC-UCUUAGCCCCAAAUAAGAGCGACGACGUCAGUGGGCGACGCGACUGGCGUCAGGUGAAAAAAAAAACGAAAGAAAAACGGA---UUGGGAUUCAAAA (((((((..(((...(-(((((........))))))....(((((((((.(......).))))))))).)))...........(....)......)))---))))......... ( -32.20) >DroSim_CAF1 10697 110 + 1 CCGAUCUAGGCCAUUC-UCUAAGCCCCAAAUAAGAGCGACGACGUCAGUGGGCGACGCGACUGGCGUCAGGUGAAAAAAAAAACGAAAGAAAAACGGA---UUGGGAUUCGAAA (((((((..(((...(-(((............))))....(((((((((.(......).))))))))).)))...........(....)......)))---))))......... ( -31.00) >DroYak_CAF1 11453 109 + 1 CCGAUCUAGGCCAUUUUUCUUAGCCUCAACGAAGAGCGACGACGUCAGUGGGCGACGCGACUGGCGUCAGGUGAAA-----AACGAAAGAAAAACGGAUAAUUGGAUAUUGAAA ...((((((.((.((((((((.((.((......))))...(((((((((.(......).)))))))))........-----.....)))))))).))....))))))....... ( -31.60) >consensus CCGAUCUAGGCCAUUC_UCUUAGCCCCAAAUAAGAGCGACGACGUCAGUGGGCGACGCGACUGGCGUCAGGUGAAAAAAA_AACGAAAGAAAAACGGA___UUGGGAUUCGAAA (((......(((..........(((........).))...(((((((((.(......).))))))))).)))...........(....).....)))................. (-21.75 = -22.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:19 2006