| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,559,325 – 14,559,423 |
| Length | 98 |
| Max. P | 0.903907 |
| Location | 14,559,325 – 14,559,423 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.80 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -8.01 |
| Energy contribution | -9.15 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.27 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14559325 98 + 23771897 ---GUUUGUGUGUG--UUGCCAUUUCAGGCGCACAC-GCA-------CACA--UACACGCACGCACA-GCGGAGAAAGCUUUCUC---CCUUGUUAACAUGACAGCCUACAAGCACA ---((.((((((((--(.(((......)))))))))-)))-------.)).--.........((..(-(.((((((....)))))---)))((((.....))))........))... ( -30.70) >DroSec_CAF1 33476 100 + 1 ---GCUUGUGUGUG--UUGCCGUUUCAUGUGCACAC-GCA-------CACGCACACACGCACGGGCA-GCGGAGAAAGCUUUCUC---CCUUGUUAACAUGACAGCCUACAAGCACA ---(((((((((((--((((.((.....((((....-)))-------)))))).))))))))(((((-(.((((((....)))))---)))((((.....))))))))..))))... ( -37.80) >DroEre_CAF1 33731 91 + 1 ---GUUUGCUUGUG--UUGCCGUUCUAUGCGCACAC-GCA-------CACACACA--CGC------A-GCGGAGAAAGCUUUCUC----CUUGUUAACAUGACAGCCUACAAGCACA ---...((((((((--((((.((....((((....)-)))-------.....)).--.))------)-))((((((....)))))----)(((((.....)))))...))))))).. ( -26.30) >DroWil_CAF1 179460 108 + 1 ---UUUUCAGUGCG--CAGCUUU----UGCACACACAGCAUACAUAACACACAUACAUAUACAUACAUGAAUACAAAGCGUCCUCUUGCCUUGUUAACAUGACAGCCUACAAGCACA ---......((((.--..(((..----(((.......))).........................((((...((((.(((......))).))))...))))..)))......)))). ( -18.50) >DroYak_CAF1 35278 93 + 1 ---GUUUGUGUGUG--UGGCCAUUUUAUGCGCACAC-GCA-------CACACACC--CGU-----GA-GCGGAGAAAGCUUUCUC---CCUUGUUAACAUGACAGCCUACAAGCACA ---((.((((((((--(((((((...))).)).)))-)))-------)))).)).--.((-----(.-((((((((....)))))---)..((((.....)))))).)))....... ( -32.30) >DroAna_CAF1 31619 90 + 1 UAUGCAUGUGUGUGUGUGG----UGUGUGCGCACAC-GCA-------UACC----------CUGACA-GCGG-GAAAGCUUUCUC---CCUUGUUAACAUGACAGCCUACAAGCACA ..(((((((((((((((((----((....))).)))-)))-------))).----------.(((((-(.((-((........))---))))))))))))).))((......))... ( -32.10) >consensus ___GUUUGUGUGUG__UUGCCAUUUUAUGCGCACAC_GCA_______CACACACA__CGC_C__ACA_GCGGAGAAAGCUUUCUC___CCUUGUUAACAUGACAGCCUACAAGCACA ...(((((((((((....((........)).))))).((.............................((.......))............((((.....))))))..))))))... ( -8.01 = -9.15 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:01 2006