| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,546,269 – 14,546,360 |
| Length | 91 |
| Max. P | 0.637491 |
| Location | 14,546,269 – 14,546,360 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -13.80 |
| Energy contribution | -15.44 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14546269 91 + 23771897 A-AGGGAGCAGGU-UGU--------GACUCCCUAUUCUAUCGAUUUUCGAGGAAAGCUCCUUAAAGGGUGCUGUUAAACUUUGUUGAAGAUUGUAGAGA--UU .-((((((((...-..)--------).)))))).(((((.((((((((((.((((((.(((....))).))).......))).))))))))))))))).--.. ( -30.31) >DroVir_CAF1 24257 95 + 1 ACAGGGCCCAAGC-UAUUGCAAUGCUGCUCGCUAUU-UAUUGAUCUCUGACUAA---CCUUUAAAUGCAGCUUAGAAACUGCAUCAAAGAA-GCAGAGA--GU ...((((...(((-.........)))))))......-......((((((.((..---.((((..((((((........)))))).)))).)-)))))))--.. ( -22.70) >DroSec_CAF1 20264 91 + 1 A-AGGGAGCAGGU-UUU--------UACUCCCUAUUCUAUCGAUUUUCGAGGAAAGCUCCUUAAAGGGUGCCGUUCAACUUUGUUGAAGGUUGUAGAGA--UU .-((((((.....-...--------..)))))).(((((.((((((((((.(((.((.(((....))).)).(.....)))).))))))))))))))).--.. ( -26.20) >DroSim_CAF1 20736 91 + 1 A-AGGGAGCAGGU-UGU--------GACUCCCUAUUCUAUCGAUUUUCGAGGAAAGCUCCUUAAAGGGUGCCGUUCAACUUUGCGGAAGGUUGUAGAGA--UU .-((((((((...-..)--------).)))))).(((((.((((((((.......((.(((....))).))(((........)))))))))))))))).--.. ( -27.80) >DroEre_CAF1 20770 92 + 1 A-AGGGAGCAGGUCUGC--------GACUCCCUAUUCUAUCGAUUUUCGGGGAAAGCUCCUUAAAGGGUAUUGUUCAACUUUGUUGAAGGUGGCAGAGA--UU .-(((((((..(((...--------)))(((((..((....)).....)))))..)))))))................(((((((......))))))).--.. ( -23.10) >DroYak_CAF1 21957 94 + 1 A-AGGGAGCGGGUCUCC--------GACUCCCUAUUCUAUCGAUUUUCGAGGAAAGCUCCUUAAAGGGUAUUGUUCAACUUUGUUGAAGGUUGUAAAGAACUU .-(((((((((....))--------).)))))).((((..(((((((((((((....)))))..(((((........)))))...))))))))...))))... ( -28.90) >consensus A_AGGGAGCAGGU_UGU________GACUCCCUAUUCUAUCGAUUUUCGAGGAAAGCUCCUUAAAGGGUGCUGUUCAACUUUGUUGAAGGUUGUAGAGA__UU ..((((((...................)))))).(((((.(((((((((((((....)))))..(((((........)))))...)))))))))))))..... (-13.80 = -15.44 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:57 2006