| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,535,083 – 14,535,203 |
| Length | 120 |
| Max. P | 0.998414 |
| Location | 14,535,083 – 14,535,203 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.70 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -23.78 |
| Energy contribution | -23.78 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.92 |
| SVM decision value | 3.09 |
| SVM RNA-class probability | 0.998414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14535083 120 - 23771897 UGAAAUUUGUCCCAUUCACUUUGUUUUCAUUUCGUAAUGUAAUCAAAUUAUGAAAAUUAUACGAGACCUUCAGUAAGUCAAGUUGGCAACAAUUUUGACUGAUUGUUUUCGCACGAACCC .....(((((...................(((((((((........)))))))))......(((((....((((.((((((((((....))).))))))).)))).))))).)))))... ( -25.00) >DroSec_CAF1 9396 118 - 1 UGAAAUUUGUCCCAUUCACUUUGUUUUCAUUUCGUAAUGUAAUCAAAUUAUGAAAAUUAUACGAGACUUUCAGUAAGUCAAGUUGGCAACAAUUUUGACUGAUUGUUUUCGCACGACC-- ........(((..................(((((((((........)))))))))......(((((....((((.((((((((((....))).))))))).)))).)))))...))).-- ( -25.50) >DroSim_CAF1 9819 118 - 1 UGAAAUUUGUCAUAUUCAGUUUGUUUUCAUUUCGUAAUGUAAUCAAAUUAUGAAAAUUAUACGAGACCUUCAGUAAGUCAAGUUGGCAACAAUUUUGACUGAUUGUUUUCGCACGACC-- ........(((..................(((((((((........)))))))))......(((((....((((.((((((((((....))).))))))).)))).)))))...))).-- ( -26.40) >DroEre_CAF1 9599 118 - 1 GAAAACCUAUCCCAUUCACUUUGUUUUCAUUUCGUAAUGUAAUCAAAUUAUGAAAAUUAUACGAGACCUUCAGUAAGUCAAGUUGGCAACAAUUUUGACUGAUUGUUUUCGCACGACC-- ((((((................)))))).(((((((((........)))))))))......(((((....((((.((((((((((....))).))))))).)))).))))).......-- ( -26.39) >DroYak_CAF1 10269 115 - 1 GAAAACCUCUCCCAUUCACUUUGUUUUCAUUUCGUAAUGUAAUCAAAUUAUGAAAAUUAUACGAGAC---CAGUAAGUCAAGUUGGCAACAAUUUUGACUGAUUGUUUUCGCACGACC-- ((((((................)))))).(((((((((........)))))))))......(((((.---((((.((((((((((....))).))))))).)))).))))).......-- ( -28.59) >DroAna_CAF1 8552 115 - 1 CUUAAUAUUU---UUUCACUUUGUUUUCAUUUCGUAAUAUAAUCAAAUUAUGAAAAUUAUACGAGACCUUCAGUAAGUCAAGUUGGCAACAAUUUUGACUGAUUGUUUUCGCACGACC-- ..........---.......((((.....(((((((((........)))))))))......(((((....((((.((((((((((....))).))))))).)))).))))).))))..-- ( -23.10) >consensus UGAAAUUUGUCCCAUUCACUUUGUUUUCAUUUCGUAAUGUAAUCAAAUUAUGAAAAUUAUACGAGACCUUCAGUAAGUCAAGUUGGCAACAAUUUUGACUGAUUGUUUUCGCACGACC__ ....................((((.....(((((((((........)))))))))......(((((....((((.((((((((((....))).))))))).)))).))))).)))).... (-23.78 = -23.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:46 2006