Locus 5261

Sequence ID 3L_DroMel_CAF1
Location 14,534,804 – 14,534,901
Length 97
Max. P 0.709567
window8317

overview

Window 7

Location 14,534,804 – 14,534,901
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.46
Mean single sequence MFE -29.77
Consensus MFE -22.69
Energy contribution -23.69
Covariance contribution 1.00
Combinations/Pair 1.21
Mean z-score -1.96
Structure conservation index 0.76
SVM decision value 0.37
SVM RNA-class probability 0.709567
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14534804 97 - 23771897
-CGCUUCCAUUUCAACGCUCAACA--------ACUCAACCUGCCGUGGAUC-----------CGGUUCCAAUUGGAUAUCCGUUUGGAACUCGGCAUGGCCCUUGAGUCAUCAU---CAU
-.......................--------((((((...((((((...(-----------(((((((((.(((....))).))))))).)))))))))..))))))......---... ( -31.50)
>DroSec_CAF1 9116 97 - 1
-CGCUUCCAUUUCAACGCUCAACA--------ACUUAACCUGCCGUGGAUC-----------CGGUUCCAAUUGGAUAUCCGUUUGGAGCUCGGCAGGGCCCUUGAGUCAUCAU---CAU
-...............((((((..--------......(((((((.(....-----------)((((((((.(((....))).)))))))))))))))....))))))......---... ( -30.60)
>DroSim_CAF1 9543 97 - 1
-CGCUUCCAUUUCAACGCUCAACA--------ACUCAACCUGCCGUGGAUC-----------CGGUUCCAAUUGGAUAUCCGUUUGGAGCUCGGCAGGGCCCUUGAGUCAUCAU---CAU
-...............((((((..--------......(((((((.(....-----------)((((((((.(((....))).)))))))))))))))....))))))......---... ( -30.60)
>DroEre_CAF1 9320 100 - 1
-CGCUUCCAUUUCAACGCUCAACA--------ACUCAACCUGCUGUGGAUC-----------CGGUUCCAAUUGGAUAUCCGUUUGGAGCUCGGCAGGGCCCUUGAGUCAUCAUCAUCAU
-...............((((((..--------......(((((((.(....-----------)((((((((.(((....))).)))))))))))))))....))))))............ ( -28.40)
>DroYak_CAF1 9981 105 - 1
-CGCUUCCAUUUCAACGCUCAACCACUCAACCACUCAACCUGCCGUGGAUC-----------CGGUUCCAAUUGGAUAUCCGUUUGGAGCUCCGCAGGGCCCUCGAGUCAUCAU---CAU
-...............................((((.....((((((((..-----------..(((((((.(((....))).))))))))))))..)))....))))......---... ( -24.40)
>DroAna_CAF1 8263 117 - 1
GGGUUUACGUUUCAACGCGCAACCACUCAAGCACUCAACCUGCCACGGACCGGGCUGAAAUACGGCUCCAAUUGGUUAUCCGUUUGGUGCCCGGCCUUUCCCCGGAGUCAUCAU---CAU
.((((..(((......))).))))((((..(((.......)))..(((...((((((......(((.((((.(((....))).)))).)))))))))....)))))))......---... ( -33.10)
>consensus
_CGCUUCCAUUUCAACGCUCAACA________ACUCAACCUGCCGUGGAUC___________CGGUUCCAAUUGGAUAUCCGUUUGGAGCUCGGCAGGGCCCUUGAGUCAUCAU___CAU
................................(((((((((((((..................((((((((.(((....))).)))))))))))))))....))))))............ (-22.69 = -23.69 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:44 2006