Locus 5260

Sequence ID 3L_DroMel_CAF1
Location 14,533,921 – 14,534,026
Length 105
Max. P 0.530362
window8316

overview

Window 6

Location 14,533,921 – 14,534,026
Length 105
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.35
Mean single sequence MFE -26.15
Consensus MFE -21.86
Energy contribution -21.78
Covariance contribution -0.08
Combinations/Pair 1.09
Mean z-score -1.27
Structure conservation index 0.84
SVM decision value -0.01
SVM RNA-class probability 0.530362
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14533921 105 + 23771897
GAUUUCUUUUGCGGUUUUUAUGCUGCCGCAACCUGAACGAGGCAUAAAACAAAUGUCAUACUCAGGACCGAAUCCAAAUCAUGUGUGCGCUACCUCAGCCUCU--CU
(((((...(((((((.........)))))))(((((....(((((.......)))))....))))).........)))))..(.(.(.(((.....)))).).--). ( -23.30)
>DroSec_CAF1 8225 96 + 1
GAUUUCUUUUGCGGUUUUUAUGCUGCCGCAACCUGAAGGAGGCAUAAAACAAAUGUCAUACUCAGGACCGAAUCCAAAUCAUGUGUGCG---------CCUCC--CU
...(((..(((((((.........)))))))...)))((((((.....((....))(((((...(((.....))).......))))).)---------)))))--.. ( -25.30)
>DroSim_CAF1 8641 105 + 1
GAUUUCUUUUGCGGUUUUUAUGCUGCCGCAACCUGAACGAGGCAUAAAACAAAUGUCAUACUCAGGACUGAAUCCAAAUCAUGUGUGCGCUACCUCAGCCUCC--CU
(((((...(((((((.........)))))))(((((....(((((.......)))))....))))).........)))))........(((.....)))....--.. ( -23.10)
>DroYak_CAF1 9059 105 + 1
GAUUUCUUUUGCGGUUUUUAUGCUGCCGCAACCUGAACGAGGCAUAAAACAAAUGUCAUACUCAGGACCGAAUCCGAAUCAUGUGUG--CUACCUCGACCUCUCUCU
(((((...(((((((.........)))))))(((((....(((((.......)))))....))))).........))))).......--.................. ( -22.20)
>DroAna_CAF1 7492 98 + 1
GAUUUCUUUUGCGGUUUUUAUGCUGCCGCAACCUGAUCGGGGCAUAAAACAAAUGUCAUACUCAGGGGCGU-----AGUCAUGUGUG--CUUGCUUGUUAGCU--GU
..........((((((..((.((.((((((.(((((....(((((.......)))))....)))))(((..-----.))).)))).)--)..)).))..))))--)) ( -26.60)
>DroPer_CAF1 13082 94 + 1
GAUUUCC-UUGCGGUUUUUAUGCUGCCGCAACCUGAGGUUGGCAUAAAACAAAUGUCAUACUCAGGAGG------AAAUCAUGUGUGUUCUGGC----CUGCC--CC
(((((((-(((((((.........)))))).((((((..((((((.......))))))..)))))))))------)))))...........((.----...))--.. ( -36.40)
>consensus
GAUUUCUUUUGCGGUUUUUAUGCUGCCGCAACCUGAACGAGGCAUAAAACAAAUGUCAUACUCAGGACCGAAUCCAAAUCAUGUGUGCGCUACCUC__CCUCC__CU
(((((...(((((((.........)))))))(((((....(((((.......)))))....))))).........)))))........................... (-21.86 = -21.78 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:43 2006