| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,533,678 – 14,533,774 |
| Length | 96 |
| Max. P | 0.893765 |
| Location | 14,533,678 – 14,533,774 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.24 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -15.28 |
| Energy contribution | -16.67 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14533678 96 + 23771897 CGC---AAAAAUUCCCGUGGCGUCGUGGAAAGAA--CCGCAACAAAUUGGGCCAAAAGGGCAAAU-UAGCCAGUG-CGGCAUAAAA-----GGAAAAGCCGCAUAAGG----- ...---........((.((((((.((((......--)))).)).((((..(((.....))).)))-).))))(((-((((......-----......)))))))..))----- ( -29.50) >DroSim_CAF1 8402 96 + 1 CGC---AAAAAUUCCCGUGGCGUCGUGGAAGGAA--CCGCAACAAAUUGGGCCAAAAGGGCAAAU-UAGCCAGUG-CGGCAUAAAA-----GGAAAAGCCGCAUAAGG----- ...---........((.((((((.((((......--)))).)).((((..(((.....))).)))-).))))(((-((((......-----......)))))))..))----- ( -29.50) >DroEre_CAF1 8181 95 + 1 CGC---AA-AAUUCCCGUGGCGUCGUGGAAAGAA--CCGCAACAAAUUGGGGCAAAAGGGCAAAU-UAGCCAGUG-CGGCAUAAAA-----GGAAAAGCCGCAUAAGG----- ...---..-...(((((....((.((((......--)))).))....)))))......(((....-..))).(((-((((......-----......)))))))....----- ( -27.20) >DroYak_CAF1 8815 101 + 1 CGC---AAAAAUUCCCGUGGCGUCUGGGAAAGAA--CCGCAACAAAUUGGGCCAAAAGGGCAAAU-UAGCCAGUG-CGGCAUAAAAGCCGGGGAAAAGCCGCAUAAGG----- .((---.....(((((.((((((.((((......--)).)))).((((..(((.....))).)))-).))))...-((((......))))))))).....))......----- ( -29.10) >DroAna_CAF1 7260 83 + 1 CGC---CAAAAUCUCUUUAACGUCGGCGAAAGAA--CCGCAACAAAUUGGGCCAAAAGGGCGAAU-UAGCCAGACCCGGCAUAA------------AGUCG------------ .((---(..............(.((((....)..--))))........(((.(.....(((....-..))).).))))))....------------.....------------ ( -18.70) >DroPer_CAF1 12745 105 + 1 GGACAAAAAAUUUCCCUUGCAAUUGCGGAAAGGAACCCGCAACAAAUUGGGCCCAAAGGGCAAAUUUAGCCAGCGGCGGCAUAAAA--------AGUGCCACAUAAAUGGUGA .......(((((((((((....((((((........)))))).....((....))))))).)))))).((((...(.(((((....--------.))))).).....)))).. ( -29.60) >consensus CGC___AAAAAUUCCCGUGGCGUCGUGGAAAGAA__CCGCAACAAAUUGGGCCAAAAGGGCAAAU_UAGCCAGUG_CGGCAUAAAA_____GGAAAAGCCGCAUAAGG_____ ................(((((((.((((........)))).)).......(((.....(((.......)))......))).................)))))........... (-15.28 = -16.67 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:42 2006