| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,526,624 – 14,526,737 |
| Length | 113 |
| Max. P | 0.646554 |
| Location | 14,526,624 – 14,526,737 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 87.04 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -17.11 |
| Energy contribution | -19.00 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14526624 113 - 23771897 AGAAAUAAGAUAUGUAAUUUUGGGGAAUUCAUUUAAAGAAA------GCAUUGCCUCUAGAAUUUCUUAGAAAAGUACAAGCUAUCUAAGCACAUUCGGGUCAAACAUGAAUUUCCUAA ...................(((((((((((((.....(...------.).((((((...((((..((((((..(((....))).))))))...))))))).)))..))))))))))))) ( -21.90) >DroSec_CAF1 1122 117 - 1 AGUAAUAGGAUA--UAAUAUAGAGGAAUUCAUUUAAAAAAGGCCUGAGAAAUGCCUCUCCAAUUUCUUAGAAAAGUACAAGCUAUCUAAGCAAAUUUGGUUCAAACAUGAAUUUCCUAA ............--.....(((.(((((((((.......((((.(.....).))))..(((((((((((((..(((....))).)))))).))).)))).......)))))))))))). ( -22.60) >DroSim_CAF1 1118 117 - 1 AGUAAUAAGAUA--UAAUAUUGAGGAAUUCAUUUAAAAAAGGCCUAAGCAAUGCCUCUCAAAUUUCUUAGAAAAGUACAAGCUAUCUAAGCAAAUUUGGGUCAAACAUGAAUUUCCUAA ............--........((((((((((.......((((.........))))(((((((((((((((..(((....))).)))))).)))))))))......))))).))))).. ( -25.60) >consensus AGUAAUAAGAUA__UAAUAUUGAGGAAUUCAUUUAAAAAAGGCCU_AGCAAUGCCUCUCAAAUUUCUUAGAAAAGUACAAGCUAUCUAAGCAAAUUUGGGUCAAACAUGAAUUUCCUAA ......................((((((((((.......((((.........))))(((((((((((((((..(((....))).)))))).)))))))))......))))).))))).. (-17.11 = -19.00 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:41 2006