Locus 5255

Sequence ID 3L_DroMel_CAF1
Location 14,515,242 – 14,515,391
Length 149
Max. P 0.942784
window8308 window8309

overview

Window 8

Location 14,515,242 – 14,515,359
Length 117
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 82.29
Mean single sequence MFE -37.11
Consensus MFE -32.08
Energy contribution -31.55
Covariance contribution -0.53
Combinations/Pair 1.25
Mean z-score -2.40
Structure conservation index 0.86
SVM decision value 1.33
SVM RNA-class probability 0.942784
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14515242 117 + 23771897
UUUU-GUAAACUUACUUCAACGAUUGACGGGGAUGUCCGCUCAUGAAGUCCGCCAGAAAACUAACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGCGAAAUCAUUUUAUAUA-UGG
((((-(((........((..((.....))..)).(((((((((((.((((((((.(........).)))))))).........)))))))))))..)))))))............-... ( -35.40)
>DroVir_CAF1 39786 117 + 1
UUU--UCAAACUUACUUUAAUGUUUGACGCUGAUGUCCGCUCAUGUAGUCCGCUAGGAAACUAACGGGUGGACUGUGACUGAAUAUGGGUGGACUGUGUGAAAUCAUUUUAUAGGCUGU
...--.....((((....(((((((.((((....((((((((((((((((((((((....))....))))))))........)))))))))))).)))).))).))))...)))).... ( -39.00)
>DroGri_CAF1 14981 118 + 1
UUAUGUG-CACUUACUUCAAUGUUUGACGCUGACGUCCGCUCAUAUAGUCCACCAUGAAACUAAUGGGUGGACUGUGACUGAAUAUGGGUGGACUGUGUGAAAUCAUUUUAUAGAUUGC
......(-((.((.....(((((((.((((....((((((((((((((((((((((.......)).))))))))........)))))))))))).)))).))).)))).....)).))) ( -37.20)
>DroWil_CAF1 14986 101 + 1
---A-GGAAACUUACUUCAAUGCUUGACGCUGAUGUCCGCUCAUGAAGUCCGCCAGAAAACUAACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGUGAAAUC--------------
---(-(....))...........((.((((....(((((((((((.((((((((.(........).)))))))).........))))))))))).)))).))...-------------- ( -35.40)
>DroMoj_CAF1 31716 118 + 1
UUUUAUGAAACUUACUUCAGGGGUUGACGUUGAUGUCCGCUCAUAUAGUCCGCUAGGAAACUAACGGGUGGACUGUGACUGAAUAUGGGUGGACUGUGCGAAAUCAUUUUAUAGA-UGG
.((((((((((((.....)))((((..(((....((((((((((((((((((((((....))....))))))))........))))))))))))...))).)))).)))))))))-... ( -38.80)
>DroPer_CAF1 12321 117 + 1
UUGG-GUUAACUUACUUCAAUGCCGGCCGCUGAUGUCCGCUCAUGUAGUCCGCCAGAAAACUGACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGCGAAAUCAUUUUAUAUA-GAU
...(-((..............)))...(((....((((((((((((((((((((.(........).))))))))........))))))))))))...)))...............-... ( -36.84)
>consensus
UUUU_GGAAACUUACUUCAAUGCUUGACGCUGAUGUCCGCUCAUGUAGUCCGCCAGAAAACUAACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGCGAAAUCAUUUUAUAGA_UGG
...........................(((....((((((((((((((((((((.(........).))))))))........))))))))))))...)))................... (-32.08 = -31.55 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 14,515,281 – 14,515,391
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.00
Mean single sequence MFE -29.98
Consensus MFE -19.80
Energy contribution -19.17
Covariance contribution -0.64
Combinations/Pair 1.29
Mean z-score -1.57
Structure conservation index 0.66
SVM decision value 0.94
SVM RNA-class probability 0.886949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14515281 110 + 23771897
UCAUGAAGUCCGCCAGAAAACUAACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGCGAAAUCAUU-UUAUAUA-UGGCUUCGAUCUGCG--------CUGAUUACAAUGAUCUCUAC
((((..((((((((.(........).))))))))))))........(.(((((.....((((..(((.-......)-))..)))).))))).--------).((((.....))))..... ( -28.50)
>DroVir_CAF1 39824 98 + 1
UCAUGUAGUCCGCUAGGAAACUAACGGGUGGACUGUGACUGAAUAUGGGUGGACUGUGUGAAAUCAUU-UUAUAGGCUGUCGUUUCUCUA-------------------UAGAUCUCU--
(((..(((((((((((....)).((((.....))))...........)))))))))..)))......(-(((((((..(....)..))))-------------------)))).....-- ( -28.60)
>DroPse_CAF1 11806 116 + 1
UCAUGUAGUCCGCCAGAAAACUGACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGCGAAAUCAUU-UUAUAUA-GAUCUGUGAUCUGCUGUUUCCUAUUGAUUAUAUUGAUCUCG--
((.(..((((((((.......(.((((.....)))).).........))))))))..).)).......-......(-(((((((((((..............)))))))..)))))..-- ( -28.13)
>DroGri_CAF1 15020 104 + 1
UCAUAUAGUCCACCAUGAAACUAAUGGGUGGACUGUGACUGAAUAUGGGUGGACUGUGUGAAAUCAUU-UUAUAGAUUGCUUUCUUUCUG-------------UAGGCGUAGAUCGCU--
((((((((((((((.........((((.....))))...........)))))))))))))).......-.((((((..(....)..))))-------------))((((.....))))-- ( -31.55)
>DroMoj_CAF1 31756 97 + 1
UCAUAUAGUCCGCUAGGAAACUAACGGGUGGACUGUGACUGAAUAUGGGUGGACUGUGCGAAAUCAUU-UUAUAGA-UGGAUUUUCUCUA-------------------UAGAUCUCU--
((.(((((((((((((....)).((((.....))))...........))))))))))).))......(-(((((((-.((....))))))-------------------)))).....-- ( -27.20)
>DroAna_CAF1 11518 111 + 1
UCAUGAAGUCCGCCAGAAAACUAACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGUGAAAUCAUUUUUAUAUU-GAUUUUCGAUAGGCG--------CUGAUAUCAGUGAUCUCUAC
......((((((((.(........).))))))))((.(((((.(((.((((..((((..(((((((.........)-))))))..)))).))--------)).)))))))).))...... ( -35.90)
>consensus
UCAUGUAGUCCGCCAGAAAACUAACGGGUGGACUGUGACUGAAUAUGGGCGGACUGUGCGAAAUCAUU_UUAUAGA_UGUCUUCGAUCUG_____________AU__CAUAGAUCUCU__
((.(((((((((((.........((((.....))))...........))))))))))).))........................................................... (-19.80 = -19.17 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:37 2006