Locus 5254

Sequence ID 3L_DroMel_CAF1
Location 14,512,239 – 14,512,338
Length 99
Max. P 0.885383
window8307

overview

Window 7

Location 14,512,239 – 14,512,338
Length 99
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -36.65
Consensus MFE -21.35
Energy contribution -22.85
Covariance contribution 1.50
Combinations/Pair 1.22
Mean z-score -2.75
Structure conservation index 0.58
SVM decision value 0.94
SVM RNA-class probability 0.885383
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14512239 99 - 23771897
ACUCGAUACAGCGGCGCCGAAACGAUCAAGAAGGCUGUAAAUGCCG-GCGGACUCAGUCACUUUGACGUCAGGCCUUCAAAGAUUAUGGCGCCGCACUUA
..........(((((((((....((((.....(((.......)))(-((.(((((((.....)))).)))..)))......)))).)))))))))..... ( -37.90)
>DroPse_CAF1 9035 99 - 1
ACCCGAGACAGCACCGC-AAACCGAAUGAGAGUGCUGUCAAUGCCUUGGGGGUUCAAUCACUUUGACGUCAGGCGCCAUAAGACAAUGGCGCCGCACUCA
....(((((((((((.(-(.......)).).))))))))..(((....((.((.(((.....))))).)).((((((((......))))))))))).)). ( -36.50)
>DroSim_CAF1 9122 92 - 1
ACUCGAUACAACGGCGCCGAAACGAUCAAGAAGGCUGUAAAUGCCG-GCGGGCUCAGUCACA-------CAGGCCUUCAAAGAUUAUGGCGCCGCACUUA
...........((((((((....((((..(((((((((....(((.-...)))........)-------)).))))))...)))).))))))))...... ( -31.00)
>DroEre_CAF1 9064 99 - 1
ACUCUAUACAGCGGCGCCGAAACGAUCAAGAAGGCUGUAAAUGCCG-GCGGGUUAAGUCACUUUGACGUCAGGCCUUCGAAGAUAAUGGCGCCGCAGUUA
..........(((((((((.....(((..(((((((......(((.-...)))...(((.....)))....)))))))...)))..)))))))))..... ( -37.60)
>DroYak_CAF1 8810 99 - 1
ACUCGAUACAGCGGCGCCGAAACGAUCAAGAAGGCGGUAAAUGCCG-GCGGGUUCAGUCACUUUGACGUCAGGCCUUCGAAGAUAAUGGCGCCGCACUUA
..........(((((((((.....(((..(((((((((....)))(-(((...((((.....))))))))..))))))...)))..)))))))))..... ( -40.40)
>DroPer_CAF1 9591 99 - 1
ACCCGAGACAGCACCGC-AAACCGAAUGAGAGUGCUGUCAAUGCCUUGGGGGUUCAAUCACUUUGACGUCAGGCGCCAUAAGACAAUGGCGCCGCACUCA
....(((((((((((.(-(.......)).).))))))))..(((....((.((.(((.....))))).)).((((((((......))))))))))).)). ( -36.50)
>consensus
ACUCGAUACAGCGGCGCCGAAACGAUCAAGAAGGCUGUAAAUGCCG_GCGGGUUCAGUCACUUUGACGUCAGGCCUUCAAAGAUAAUGGCGCCGCACUUA
..........(((((((((..........(((((((......(((.....)))((((.....)))).....)))))))........)))))))))..... (-21.35 = -22.85 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:35 2006