| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,509,196 – 14,509,287 |
| Length | 91 |
| Max. P | 0.524902 |
| Location | 14,509,196 – 14,509,287 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.58 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -15.29 |
| Energy contribution | -16.27 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14509196 91 + 23771897 --------AGCGAAAAGUUUCCGUCAGUUGGA-----GCAGACCUACGACUAAUGGCC--CCACACAGAGCAGACUCUAUUUGGUCUGCAAAUUGGAGGAGAGUCG --------..(((....(((((..(((((...-----(((((((.........((...--.))...((((....))))....))))))).)))))..))))).))) ( -27.40) >DroSec_CAF1 5815 74 + 1 --------AGCGAAAAGUUUCCGUCAGUUGGA-----GACGU-------------------CACACAGAGCCGACUCUAUUUGGUCUGCAAAUUGGAGGAGAGUCG --------.(.((...(((((((.....))))-----))).)-------------------).).......(((((((.((..((......))..))..))))))) ( -22.60) >DroSim_CAF1 5972 91 + 1 --------AGCGAAAAGUUUCCGUCAGUUGGA-----GCAGUCCUACGACUAAUGGCC--CCACACAGAGCAGACUCUAUUUGGUCUGCAAAUUGGAGGAGAGUCG --------..(((....(((((..(((((((.-----((((((....))))....)).--)).......(((((((......))))))).)))))..))))).))) ( -28.00) >DroEre_CAF1 6113 85 + 1 --------AUCGAAAAGUUUCCGUCAUUUAGA-----GCAG-------ACUAUUGGCC-CCCACACAGAGCAGACUCUAUUUGGUCUGCAAAUUGAAGGAGAGUUC --------......((.(((((.(((......-----((((-------((((.(((..-.)))...((((....))))...))))))))....))).))))).)). ( -22.20) >DroYak_CAF1 5819 86 + 1 --------AUCGAAAAGUUUCCGUCAGUUAGA-----ACGG-------ACUACUGGCCCCCCACACAGAGCAGACUCUAUUUGGUCUGCAAAUUGAAGGAGAGUCG --------..(((....(((((((((((.((.-----....-------.))))))))............(((((((......)))))))........))))).))) ( -23.80) >DroAna_CAF1 5668 92 + 1 ACUGAGAAAUUGAAAAGUUUCCGUCACUUAGAUUGAAGCCAACCUA-GACUGA-------------AGAGUAGCAUUUAUUUGGUCUGCAAAUUGGAGGAGAGUUA ..............((.((((((((.....))).....((((..((-(((..(-------------(.((......)).))..)))))....)))).))))).)). ( -16.20) >consensus ________AGCGAAAAGUUUCCGUCAGUUAGA_____GCAG_______ACUAAUGGCC__CCACACAGAGCAGACUCUAUUUGGUCUGCAAAUUGGAGGAGAGUCG .................(((((.((((((........................(((....)))......(((((((......))))))).)))))).))))).... (-15.29 = -16.27 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:32 2006