Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,551,207 – 1,551,327 |
Length | 120 |
Max. P | 0.624785 |
Location | 1,551,207 – 1,551,327 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -19.36 |
Energy contribution | -20.93 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.85 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1551207 120 - 23771897 AUUGCCAAGGCAACAUAUCAAUUGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA .((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.(((...))).)))))........))))))))).... ( -24.60) >DroSec_CAF1 8868 120 - 1 AUUGCCAAGGCAACAUAUCAAUCGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA .((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.(((...))).)))))........))))))))).... ( -24.60) >DroSim_CAF1 8986 120 - 1 AUUGCCAAGGCAACAUAUCAAUCGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA .((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.(((...))).)))))........))))))))).... ( -24.60) >DroYak_CAF1 9564 107 - 1 AUUGCCAAGGCAACAUCGUAAUUGGUUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACU-------------ACAUUAUUUUAAGGCCAUCAAA ...(((.((((..((.......))(((.....))))))).(((((((((((.((....))))))))))).)).............-------------............)))....... ( -17.70) >consensus AUUGCCAAGGCAACAUAUCAAUCGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA .((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.((.....)).)))))........))))))))).... (-19.36 = -20.93 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:15 2006