Locus 525

Sequence ID 3L_DroMel_CAF1
Location 1,551,207 – 1,551,327
Length 120
Max. P 0.624785
window787

overview

Window 7

Location 1,551,207 – 1,551,327
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -22.88
Consensus MFE -19.36
Energy contribution -20.93
Covariance contribution 1.56
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.85
SVM decision value 0.19
SVM RNA-class probability 0.624785
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1551207 120 - 23771897
AUUGCCAAGGCAACAUAUCAAUUGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA
.((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.(((...))).)))))........))))))))).... ( -24.60)
>DroSec_CAF1 8868 120 - 1
AUUGCCAAGGCAACAUAUCAAUCGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA
.((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.(((...))).)))))........))))))))).... ( -24.60)
>DroSim_CAF1 8986 120 - 1
AUUGCCAAGGCAACAUAUCAAUCGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA
.((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.(((...))).)))))........))))))))).... ( -24.60)
>DroYak_CAF1 9564 107 - 1
AUUGCCAAGGCAACAUCGUAAUUGGUUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACU-------------ACAUUAUUUUAAGGCCAUCAAA
...(((.((((..((.......))(((.....))))))).(((((((((((.((....))))))))))).)).............-------------............)))....... ( -17.70)
>consensus
AUUGCCAAGGCAACAUAUCAAUCGGGUUUUAUAGCGCUUACCAUUAAAUAGUCUUAAUAGCUGUUUGAUCGGAAAACAUACCACUAUUUCAUAUUGGUACAUAACUUUAAGGCUAUCAAA
.((((....)))).................(((((.(((((((((((((((.((....))))))))))).))......(((((.((.....)).)))))........))))))))).... (-19.36 = -20.93 +   1.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:15 2006