Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,502,004 – 14,502,124 |
Length | 120 |
Max. P | 0.931495 |
Location | 14,502,004 – 14,502,124 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -14.74 |
Energy contribution | -16.18 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.37 |
Structure conservation index | 0.74 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14502004 120 - 23771897 CACCCUCUUUAUUGGUUGUUUUUGGGAAUUCACCUUGUAGACGACCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUGAAUCCUGUCUCUUUAAUCCGACACAUUUCCGUAUUUUCCU ...........(..((((((...(((((......((((((.(((.....))).))))))....)))))....))))))..)....((((..........))))................. ( -21.50) >DroSec_CAF1 93726 120 - 1 CAUCCUCUUUAUUGGUUGUUUUUGGGAAUUCACCUUGUAGUCGUCCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUAAAUCCUGUCUCUUUAAUCCGACACAUUUCCUUAUUUUCCU ...........(((((((((...(((((......((((((.((.......)).))))))....)))))....)))))))))....((((..........))))................. ( -20.70) >DroSim_CAF1 108712 120 - 1 CCUCCUCUUUAUUGGUUGUUUUGGGGAAUUCACCUUGUAAUCGUCCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUAAAUCCUGUCUCUUUAAUCCGACACAUUUCCUUAUUCUCCU ...........(((((((((..((((((((....(((((..((.......))..))))).))))))))....)))))))))....((((..........))))................. ( -18.80) >DroEre_CAF1 109302 120 - 1 CGUCCACUUUUUUGGUUGUUUUUGGGAAUUCACCUUUUCCAUGUCCAAACCGCCUAUAAAAAUGUCCUGCAUAACAACUAAAUCCUGUCUCUGCAAUCCGACACUGUUCCUUAUUUUCCU .(((((.((((..(((.((((.((((((.......)))))).....)))).)))...)))).))...((((..(((.........)))...))))....))).................. ( -16.50) >DroYak_CAF1 101540 120 - 1 CGUCCACUUUUUCGGUUGUUUUGGGGAAUUCAUCUUUCAGAUGACCCAACCGCCUAUAAAAUUCUCCUUCAUAACAACUAAAUCCUGUCGCUUCAAUCCGACAAUAAUCCUUACUUUCCU .............(((((((..((((((((((((.....)))))................))))))).....)))))))......(((((........)))))................. ( -21.49) >consensus CAUCCUCUUUAUUGGUUGUUUUUGGGAAUUCACCUUGUAGACGUCCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUAAAUCCUGUCUCUUUAAUCCGACACAUUUCCUUAUUUUCCU ...........(((((((((...(((((......((((((.((.......)).))))))....)))))....)))))))))....((((..........))))................. (-14.74 = -16.18 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:28 2006