Locus 5248

Sequence ID 3L_DroMel_CAF1
Location 14,488,850 – 14,488,957
Length 107
Max. P 0.609869
window8299

overview

Window 9

Location 14,488,850 – 14,488,957
Length 107
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 92.17
Mean single sequence MFE -29.60
Consensus MFE -25.89
Energy contribution -26.09
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.87
SVM decision value 0.15
SVM RNA-class probability 0.609869
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14488850 107 + 23771897
--ACUGAUCCUCUCUUUUAUUAUUCUGGUACGAGCCAACUAAAGAUCUGCGG-CUGGCUAUUUAUGGCCAAGAGCUGU-UGCCGCGUUGCAGUUGUUGGUCAAACGUUCCA
--........................((.((((((((.((..(....)..))-.))))).....(((((((.((((((-.((...)).)))))).)))))))..))).)). ( -30.20)
>DroSec_CAF1 85212 107 + 1
--ACUGAUCCUCUCUUUUAUUAUUCUGGUACGAGCCAACUAAAGAUCUGCCG-CUGGCUAUUUAUGGCCAAGAGCUGU-UGCCGCGUUGCAGUUGUUGGUCAAACGUUCCA
--........................((.((((((((.(............)-.))))).....(((((((.((((((-.((...)).)))))).)))))))..))).)). ( -28.90)
>DroSim_CAF1 100747 108 + 1
--ACUGAUCCUCUCUUUUAUUAUUCUGGUACGAGCCAACUAAAGAUCUGCGG-CUGGCUAUUUAUGGCCAAGAGCUGUUUACCGCGUUGCAGUUGUUGGUCAAACGUUCCA
--........................((.((((((((.((..(....)..))-.))))).....(((((((.((((((..........)))))).)))))))..))).)). ( -29.40)
>DroEre_CAF1 100583 108 + 1
--AGUGAUCCUAUCCUAUAUUAUUCUGGUACGAACCAACUAAAGAUCUGCGGCCUGGCUAUUUAUGGCCAAGAGCUGU-UGCCGCGUUGCAGUUGUUGGUCAAACGUUCCA
--........................((.(((.((((((.......(((((((.((((.....(((((.....)))))-.)))).)))))))..))))))....))).)). ( -29.40)
>DroYak_CAF1 92674 103 + 1
CAACUGAUCCUAUCCCAUAUUUUUCUGGUACGAGCCAAGUAAAGAUC-------UGGCUAUUUAUGGCCAAGAGCUGU-UGCCGCGUUGCAGUUGUUGGUCAAACGUUCCA
..........................((.((((((((..(....)..-------))))).....(((((((.((((((-.((...)).)))))).)))))))..))).)). ( -30.10)
>consensus
__ACUGAUCCUCUCUUUUAUUAUUCUGGUACGAGCCAACUAAAGAUCUGCGG_CUGGCUAUUUAUGGCCAAGAGCUGU_UGCCGCGUUGCAGUUGUUGGUCAAACGUUCCA
..........................((.((((((((.................))))).....(((((((.((((((..........)))))).)))))))..))).)). (-25.89 = -26.09 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:27 2006