Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,486,702 – 14,486,794 |
Length | 92 |
Max. P | 0.646294 |
Location | 14,486,702 – 14,486,794 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -32.17 |
Consensus MFE | -25.41 |
Energy contribution | -25.52 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.49 |
Structure conservation index | 0.79 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14486702 92 - 23771897 CUGCCAGUCAAUGGAUCUACGACU------UCCAGU------------------ACCGGCCCACCGCCCGGAGUUCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA ..((.......((((.........------))))..------------------...(((((.((....))...(((((((((((........))))))))))))))))....)). ( -31.40) >DroPse_CAF1 109041 98 - 1 CUGCCAGUCAAUGGGAGUUCGACUGGGACACCGGGU------------------UCCGGCCUACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA ..(((.((((((((.(((((((...(.((.(((((.------------------..(((....)))))))).)).)..)))))))))))))))..((.....)).)))........ ( -34.30) >DroSec_CAF1 83076 92 - 1 CUGCCAGUCAAUGGAUCUGCGACU------UCCAGU------------------GCCGGCCCACCGCCCGGAGUUCAAUCGGACUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA ..((..(.((.((((.........------)))).)------------------).)(((((.((....))...(((((((((..(((....)))))))))))))))))....)). ( -30.50) >DroEre_CAF1 98377 92 - 1 CUGCCAGUCAAUGGAUCUACGACU------UCCAGC------------------ACCGGCCCACCGCCCGGAGUUCAAUCGGACUUCAUUGACGAUCUGAUUGAGGGCCAUAAGCA ..((.......((((.........------))))..------------------...(((((.((....))...(((((((((..((......))))))))))))))))....)). ( -28.50) >DroAna_CAF1 94524 110 - 1 CUGCCAGUCAAUGGCACUUCCAUA------UCGACCACAAUAUCAACGGACUCCUCCGGCCCACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA .(((((.....)))))........------.................(((....)))(((((.((....))....((((((((((........)))))))))).)))))....... ( -34.00) >DroPer_CAF1 110054 98 - 1 CUGCCAGUCAAUGGGAGUUCGACUGGGACACCGGGU------------------UCCGGCCUACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA ..(((.((((((((.(((((((...(.((.(((((.------------------..(((....)))))))).)).)..)))))))))))))))..((.....)).)))........ ( -34.30) >consensus CUGCCAGUCAAUGGAACUUCGACU______UCCAGU__________________UCCGGCCCACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA ...(((.....)))...........................................(((((.((....))....((((((((((........)))))))))).)))))....... (-25.41 = -25.52 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:26 2006