Locus 5246

Sequence ID 3L_DroMel_CAF1
Location 14,480,792 – 14,480,884
Length 92
Max. P 0.843582
window8297

overview

Window 7

Location 14,480,792 – 14,480,884
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 80.83
Mean single sequence MFE -27.28
Consensus MFE -19.07
Energy contribution -19.04
Covariance contribution -0.03
Combinations/Pair 1.21
Mean z-score -1.98
Structure conservation index 0.70
SVM decision value 0.76
SVM RNA-class probability 0.843582
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14480792 92 - 23771897
UCCCCAUUCCUGAAAAAAAGAAGCCCCUCGUCCGCCAA-CGUGUACAUUUUUUGGGGGAGAGUAAUCGAAAAGUAUUCGAUGGAGCUCUUGCC---
.(((((.............((......))((.(((...-.))).))......)))))((((((.((((((.....))))))...))))))...--- ( -22.70)
>DroSec_CAF1 77238 91 - 1
CCGCCAUUCCUGAAA-AAAGAAGCCCCUCGUCCGCAAU-CGGGUACAUAUUUUGGGGGAGAGUAAUCGAAAAGUAUUCGAUGGAGCUCUUCCC---
........(((((..-...((......))(....)..)-))))...........(((((((((.((((((.....))))))...)))))))))--- ( -23.30)
>DroSim_CAF1 92749 91 - 1
CCGCCAUUCCUGAAA-AAAGAAGCCCCUCGUCCGCAAA-CGGGUACAUAUUUUGGGGGAGAGUAAUCGAAAAGUAUUCGAUGGAGCUCUUCCC---
...............-......(..((.(((......)-))))..)........(((((((((.((((((.....))))))...)))))))))--- ( -23.50)
>DroEre_CAF1 92681 90 - 1
UCCCCAUUCCGGAAA--AAG-AGCCCCUCGUCCCCAAAAGGGGUACAUUUUUUGGGGGAGAGUAAUCGAAAAGUAUUCGAUGGAGCUCUUUCU---
(((.......))).(--(((-((((((((..((((((((((......))))))))))..)))..((((((.....)))))))).)))))))..--- ( -34.10)
>DroYak_CAF1 84549 91 - 1
UUUUCAUUCCUGAAA--AAGAAGCCCCUCGCCCGCAAAAGGGGUACAUUUUUUGGGGGAGAGUAAUCGAAAAGCAUUCGAUGGAGCUCUUUCU---
.......(((..(((--((...((((((..........))))))...)))))..)))((((((.((((((.....))))))...))))))...--- ( -29.60)
>DroPer_CAF1 103538 86 - 1
GACUCUCCCCCCA--------A--CCCCCGCACCCCGUUUGGGUGCAUUUUUUGAGGGAGAGUAAUCGAAAAGUAUUCGAUGAAACUCUUCCUUCG
.............--------.--.....((((((.....)))))).......((((((((((.((((((.....))))))...)))))))))).. ( -30.50)
>consensus
UCCCCAUUCCUGAAA__AAGAAGCCCCUCGUCCGCAAA_CGGGUACAUUUUUUGGGGGAGAGUAAUCGAAAAGUAUUCGAUGGAGCUCUUCCC___
......................((((..............))))..........(((((((((.((((((.....))))))...)))))))))... (-19.07 = -19.04 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:25 2006