Locus 5245

Sequence ID 3L_DroMel_CAF1
Location 14,476,115 – 14,476,220
Length 105
Max. P 0.969057
window8296

overview

Window 6

Location 14,476,115 – 14,476,220
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 95.81
Mean single sequence MFE -28.92
Consensus MFE -26.34
Energy contribution -26.74
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.62
Structure conservation index 0.91
SVM decision value 1.64
SVM RNA-class probability 0.969057
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14476115 105 + 23771897
AACCUAAUCUAAUCCCCCGACUGACACUUUCAAAACCAAUUACUCACCCGUUUGUUAGGGAUUGGGGUUCCAGGGAGGAGAACUCCUCUUCAACCUCGCCGAUUG
....(((((.((((((..(((.(((........................))).))).))))))((((((...(((((((....))))))).))))))...))))) ( -26.76)
>DroSec_CAF1 72514 105 + 1
AGCCUAAUCUAAUCCCCCGACUGACACUUUCAAAACCGAUUACUCACCCGUUUGUUAGGGAUUGGGGUUCCAGGGAGGAGAACUCCUCCUCAACCUCGCCGAUUG
....(((((.((((((..(((.(((........................))).))).))))))((((((...(((((((....))))))).))))))...))))) ( -29.56)
>DroSim_CAF1 88357 105 + 1
AGCCUAAUCUAAUCCCCCGACUGACACUUUCAAAACCGAUUACUCACCCGUUUGUUAGGGAUUGGGGUUCCAGGGAGGAGAACUCCUCCUCAACCUCGCCGAUUG
....(((((.((((((..(((.(((........................))).))).))))))((((((...(((((((....))))))).))))))...))))) ( -29.56)
>DroEre_CAF1 88242 104 + 1
AACCUAAUCUAAUCC-CCGACUGACACCUUCAAAACCAAUUACUCACCCGUUUGUUAGGGAUUGGGGUUCCAGGGAGGAGAACUCCUCCUCGACCUCGCCGAUGG
......(((.(((((-(..((.(((........................))).))..))))))((((((...(((((((....))))))).))))))...))).. ( -31.06)
>DroYak_CAF1 79849 105 + 1
UACCUAAUCUAAUCCCCCGACUGACACUUUCAAAACCAAUUACUCACCCGUUUGUUAGGGACUGGGGUUCCAGGGAGGAGAACUCCUCCUCGACCUCGCCGAUGG
......(((.....(((..((.(((........................))).))..)))...((((((...(((((((....))))))).))))))...))).. ( -27.66)
>consensus
AACCUAAUCUAAUCCCCCGACUGACACUUUCAAAACCAAUUACUCACCCGUUUGUUAGGGAUUGGGGUUCCAGGGAGGAGAACUCCUCCUCAACCUCGCCGAUUG
....(((((.((((((..(((.(((........................))).))).))))))((((((...(((((((....))))))).))))))...))))) (-26.34 = -26.74 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:24 2006