| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,473,804 – 14,473,909 |
| Length | 105 |
| Max. P | 0.528318 |
| Location | 14,473,804 – 14,473,909 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 94.29 |
| Mean single sequence MFE | -21.27 |
| Consensus MFE | -17.47 |
| Energy contribution | -18.13 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14473804 105 - 23771897 CUUUAAGAGUGAAGAAAAAGAUGAGAGUAAUGAACUCAAAAUAGUUAAGGAGGAGGUCAAAGUAACACAUCAGGAUCUUAGGGAACAGAUCCAGGAGAUCGAGGC (((((....))))).....((((.((((.....))))......((((..((.....))....)))).))))..((((((..(((.....)))..))))))..... ( -22.30) >DroSec_CAF1 70363 105 - 1 CUUGAAGAGUGAAGAAAAAGAUGAGAGUAAUGAACUCAAGGAAGUUAAGGAGGAGGUCAAAGUAACACAUCAGGAUCUUAGGGAACAGAACCAGGAGAUCGAGGC (((................((((.((((.....))))......((((..((.....))....)))).))))..((((((..((.......))..))))))))).. ( -19.90) >DroSim_CAF1 85921 105 - 1 CUUGAAGAGUGAAGAAAAAGAAGAGAGUAAUGUACUCAAGGAAGUUAAGGAGGAGGUCAAAGUAUCACAUCAGGAUCUUGGGGAACAGAUCCAGGAGAUCGAGGC (((((.((((((............(((((...)))))...((..((......))..))......)))).)).((((((.(.....)))))))......))))).. ( -21.60) >consensus CUUGAAGAGUGAAGAAAAAGAUGAGAGUAAUGAACUCAAGGAAGUUAAGGAGGAGGUCAAAGUAACACAUCAGGAUCUUAGGGAACAGAUCCAGGAGAUCGAGGC (((................((((.((((.....))))......((((..((.....))....)))).))))..((((((..((.......))..))))))))).. (-17.47 = -18.13 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:21 2006