Locus 5239

Sequence ID 3L_DroMel_CAF1
Location 14,461,129 – 14,461,221
Length 92
Max. P 0.814403
window8287

overview

Window 7

Location 14,461,129 – 14,461,221
Length 92
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 85.06
Mean single sequence MFE -30.90
Consensus MFE -25.74
Energy contribution -25.68
Covariance contribution -0.05
Combinations/Pair 1.08
Mean z-score -2.08
Structure conservation index 0.83
SVM decision value 0.66
SVM RNA-class probability 0.814403
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14461129 92 + 23771897
UCAUUUCAAUUUCUGUGGUGUGGCU------GCGGCGAGCCGCUGAAAGCGAAAUGAUGUUCGGACCAUGGUCUAUUAGAGACCGAAUCCCCAGCCCA
(((((((..((((.(((((...((.------...))..))))).))))..))))))).....(((...((((((.....))))))..)))........ ( -29.50)
>DroPse_CAF1 81531 81 + 1
UCAUUUCAAUUUCUGUGGCGUG--------------GAGCCGCUGAAAGCGAAAUGAUGUUCGGCCCAUGGUCUAUUAGAGACCAACUCA---GAACC
(((((((..((((.(((((...--------------..))))).))))..))))))).((((......((((((.....)))))).....---)))). ( -30.50)
>DroSec_CAF1 58115 92 + 1
UCAUUUCAAUUUCUGUGGUGUGUCU------GCGGCGAGCCGCUGAAAGCGAAAUGAUGUUCGGACCAUGGUCUAUUAGAGACCGAAUCCCCAGCCCC
(((((((..((((.(((((.(((..------...))).))))).))))..))))))).....(((...((((((.....))))))..)))........ ( -30.10)
>DroYak_CAF1 64747 98 + 1
UCAUUUCAAUUUCUGUGGUGUGGCUGCGGCUGCGGCGAGCCGCUGAAAGCGAAAUGAUGUUCGGACCAUGGUCUAUUAGAGACCGAAUCCCCAGCCCC
(((((((..((((.(((((...(((((....)))))..))))).))))..))))))).....(((...((((((.....))))))..)))........ ( -35.70)
>DroAna_CAF1 71400 92 + 1
UCAUUUCAAUUUCUGUGGCGUGGCU------GUGGCGAGCCGCUGAAAGCGAAAUGAUGUUCAGACCAUGGUCUAUUAGAGACCGAAGCCCCACCUGC
(((((((..((((.(((((.(.((.------...)).)))))).))))..)))))))...........((((((.....))))))............. ( -29.10)
>DroPer_CAF1 81802 81 + 1
UCAUUUCAAUUUCUGUGGCGUG--------------GAGCCGCUGAAAGCGAAAUGAUGUUCGGCCCAUGGUCUAUUAGAGACCAACUCA---GAACC
(((((((..((((.(((((...--------------..))))).))))..))))))).((((......((((((.....)))))).....---)))). ( -30.50)
>consensus
UCAUUUCAAUUUCUGUGGCGUGGCU______GCGGCGAGCCGCUGAAAGCGAAAUGAUGUUCGGACCAUGGUCUAUUAGAGACCGAAUCCCCAGCCCC
(((((((..((((.(((((...(((........)))..))))).))))..)))))))...........((((((.....))))))............. (-25.74 = -25.68 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:16 2006