Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,454,072 – 14,454,173 |
Length | 101 |
Max. P | 0.605629 |
Location | 14,454,072 – 14,454,173 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 85.63 |
Mean single sequence MFE | -31.28 |
Consensus MFE | -24.41 |
Energy contribution | -25.50 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.20 |
Mean z-score | -2.03 |
Structure conservation index | 0.78 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14454072 101 - 23771897 CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGGGGGAGCAACAUUAACAGCGUGGGG-CUGAAUU ..............(((((((((((....))))((((((((.(((((((((((.....))))))))).))....))))))))...)))))))..-....... ( -32.60) >DroSec_CAF1 51223 100 - 1 CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGG-GGAGCAACAUUAACAGCGUGGGG-CUGAAUU ..............(((((((((((....))))((((((((.(((((((((((.....))))))))).))-...))))))))...)))))))..-....... ( -33.20) >DroSim_CAF1 66316 101 - 1 CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGGGGGAGCAACAUUAACAGCGUGGGG-CUGAAUU ..............(((((((((((....))))((((((((.(((((((((((.....))))))))).))....))))))))...)))))))..-....... ( -32.60) >DroEre_CAF1 66621 102 - 1 CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGCUGCACCUGCUGUUAAAAAAGUUAACAGCACUGGGGAGCAAAGUUAACAGCGUGGGGCCUGAAUC ........((((.(((.(((((((((((((((.....))))))))((((((((.....))))))))....)))))))..((.....))....))).)))).. ( -34.30) >DroYak_CAF1 57357 102 - 1 CCAUACAUUUUGAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACUGGGGAGCAAAGUUAACAGCGUGGGGCCUGAAUC ........(((..(((.(((((((((((((((.....))))))))((((((((.....))))))))....)))))))..((.....))....)))..))).. ( -31.40) >DroAna_CAF1 64801 86 - 1 ----------UGU----UGCCUGUUGGUUCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAGCAGAGCG-GCGAUUAACAUUAACAGCAUGGGG-CCCGAUC ----------...----.(((....)))((((.......((.((((((((((...((((((((......-))...)))))))))))))).)).)-))))).. ( -23.61) >consensus CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGGGGGAGCAACAUUAACAGCGUGGGG_CUGAAUC ..............(((((((((((....))))((((((((.(((((((((((.....)))))))))....)).))))))))...))))))).......... (-24.41 = -25.50 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:11 2006