Locus 5235

Sequence ID 3L_DroMel_CAF1
Location 14,447,922 – 14,448,041
Length 119
Max. P 0.805925
window8281

overview

Window 1

Location 14,447,922 – 14,448,041
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.24
Mean single sequence MFE -23.11
Consensus MFE -20.81
Energy contribution -20.97
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.90
SVM decision value 0.63
SVM RNA-class probability 0.805925
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14447922 119 + 23771897
G-CGGGAAGAAAUGCAAUUACAAAUAAUAUGCAACUUGGUCGUUUAUCUUUAUCUUAUUUAUGAAAACGACAACAAACCGACAAAUGCAAUUUAUGUGUUUGUUGCCGGUCAAUGCAAAA
.-(((.......((((((((....)))).)))).....(((((((.((..............))))))))).......(((((((((((.....))))))))))))))............ ( -24.04)
>DroVir_CAF1 74508 118 + 1
AACAACAACAAAUGCAAUUACAAAUAAUAUGCAACUUGGUCGUUUAUCUUUAUCUUAUUUAUGAAAACGACAACAAACCGACAAAUGCAAUUUAUGUGUUUGU-GCUGGUCAAUGCAAA-
.............................((((..((((((((((.((..............))))))))).....(((((((((((((.....)))))))))-..)))))))))))..- ( -21.04)
>DroPse_CAF1 67110 118 + 1
G-AGAGAAGAAAUGCAAUUACAAAUAAUAUGCAACUUGGUCGUUUAUCUUUAUCUUAUUUAUGAAAACGACAACAAACCGACAAAUGCAAUUUAUGUGUUUGUUGCUGGUCAAUGCAAA-
.-.((..((...((((((((....)))).)))).....(((((((.((..............))))))))).......(((((((((((.....)))))))))))))..))........- ( -22.04)
>DroYak_CAF1 51012 119 + 1
G-CGGGAAGAAAUGCAAUUACAAAUAAUAUGCAACUUGGUCGUUUAUCUUUAUCUUAUUUAUGAAAACGACAACAAACCGACAAAUGCAAUUUAUGUGUUUGUUGCCUCUCAAUGCAAAA
(-((...(((..((((((((....)))).)))).....(((((((.((..............))))))))).......(((((((((((.....)))))))))))..)))...))).... ( -24.44)
>DroAna_CAF1 59198 119 + 1
G-AGGAAAGAAAUGCAAUUACAAAUAAUAUGCAACUUGGUCGUUUAUCUUUAUCUUAUUUAUGAAAACGACAACAAACCGACAAAUGCAAUUUAUGUGUUUGUUGCCGGUCAUUGCAAAA
.-..........((((((.((.................(((((((.((..............))))))))).......(((((((((((.....)))))))))))...)).))))))... ( -25.04)
>DroPer_CAF1 67596 118 + 1
G-AGAGAAGAAAUGCAAUUACAAAUAAUAUGCAACUUGGUCGUUUAUCUUUAUCUUAUUUAUGAAAACGACAACAAACCGACAAAUGCAAUUUAUGUGUUUGUUGCUGGUCAAUGCAAA-
.-.((..((...((((((((....)))).)))).....(((((((.((..............))))))))).......(((((((((((.....)))))))))))))..))........- ( -22.04)
>consensus
G_AGAGAAGAAAUGCAAUUACAAAUAAUAUGCAACUUGGUCGUUUAUCUUUAUCUUAUUUAUGAAAACGACAACAAACCGACAAAUGCAAUUUAUGUGUUUGUUGCCGGUCAAUGCAAA_
.............................((((.....(((((((.((..............))))))))).......(((((((((((.....)))))))))))........))))... (-20.81 = -20.97 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:10 2006