Locus 5234

Sequence ID 3L_DroMel_CAF1
Location 14,441,172 – 14,441,267
Length 95
Max. P 0.953331
window8280

overview

Window 0

Location 14,441,172 – 14,441,267
Length 95
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 77.08
Mean single sequence MFE -20.81
Consensus MFE -4.27
Energy contribution -5.76
Covariance contribution 1.49
Combinations/Pair 1.29
Mean z-score -2.24
Structure conservation index 0.21
SVM decision value 1.43
SVM RNA-class probability 0.953331
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14441172 95 + 23771897
-AAACAAUAAAUUUUUCUGUUCCGCCAAUGAGUCAAUGGCGAUGACAAAUUAUUGAGUUAAAGGUGCUUAGAAAUCUUUUAUUGUC-AC----AUAAAAUA
-..((((((((..((((((...((((..(((.(((((((..........))))))).)))..))))..))))))...)))))))).-..----........ ( -21.50)
>DroSim_CAF1 53467 95 + 1
-AAACAAUAUAUUUUUCUGUUGCGCCUAUGAGUCAAUAGCGAUGACACAUUAUUGACUUAAAGGUGCUUAAAAAUCUUUAAUUGUC-AC----AUAAAACA
-..(((((.............((((((.(((((((((((.(......).))))))))))).)))))).............))))).-..----........ ( -23.27)
>DroEre_CAF1 53975 94 + 1
-AAUCAAUACCUCUUUCUGUUGC-CGUAUGAGUCAAUGGCGAUGACAAAUUAUUGAGUAAAUGGUGCUUAGAAAUUAUUUAUUGUC-AC----AUAAAACA
-..((((((......((.(((((-(((........)))))))))).....))))))(((((((((........)))))))))....-..----........ ( -16.60)
>DroYak_CAF1 44419 93 + 1
-AAUCAAUACAU-UUACUGUUGC-CGUAUGAGUCAAUGGCGAUGACAAAUUAUUGAGUUAAAGGCGCUUAGAAAUCACUAAUUGUC-AC----ACAAAACA
-..((((((.((-((..((((((-(((........)))))))))..))))))))))......((((.((((......)))).))))-..----........ ( -19.60)
>DroAna_CAF1 52857 92 + 1
CAAUCAAUAAAUUCUGCCGUUGUCUGAGUGAGUCAAU-UCGAUGACAAAUUCUUGAAU----GGCG---AGCAAUA-UUGAUUGUUUGCAUCAAUGAAAUA
(((((((((..(((.((((((....((((..((((..-....))))..))))...)))----))))---))...))-)))))))................. ( -23.10)
>consensus
_AAUCAAUAAAUUUUUCUGUUGC_CGUAUGAGUCAAUGGCGAUGACAAAUUAUUGAGUUAAAGGUGCUUAGAAAUCAUUAAUUGUC_AC____AUAAAACA
...............................((((.......)))).........((((((((((........)))))))))).................. ( -4.27 =  -5.76 +   1.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:09 2006