Locus 5233

Sequence ID 3L_DroMel_CAF1
Location 14,440,530 – 14,440,626
Length 96
Max. P 0.573191
window8279

overview

Window 9

Location 14,440,530 – 14,440,626
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 91.66
Mean single sequence MFE -12.40
Consensus MFE -10.22
Energy contribution -10.13
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.88
Structure conservation index 0.82
SVM decision value 0.08
SVM RNA-class probability 0.573191
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14440530 96 - 23771897
AA-GGAAAAAAUAAAACCCAAAACACGAAAUCGCAAUCAUUUUACUUUUGAUUAUAAACGAAAUAAAAUGAAAAAGUGCCGG-AGAAAGAGGAUGAAA
..-..............((...((.((....))...((((((((.(((((........)))))))))))))....))...))-............... (  -9.90)
>DroSec_CAF1 37848 96 - 1
AA-AGAAAAAAUAAAACCCAAAACACGAAAUCGCAAUCAUUUUACUUUUGAUUAUAAACGAAAUAAAAUGAAAAGAUGCCGG-AGAAAGAGGAUGAAA
..-.............(((......((..(((....((((((((.(((((........)))))))))))))...)))..)).-.....).))...... ( -12.50)
>DroSim_CAF1 52830 96 - 1
AA-AGAAAAAAUAAAACCCAAAACACGAAAUCGCAAUCAUUUUACUUUUGAUUAUAAACGAAAUAAAAUGAAAAGAUGCCGG-AGAAAGAGGAUGAAA
..-.............(((......((..(((....((((((((.(((((........)))))))))))))...)))..)).-.....).))...... ( -12.50)
>DroEre_CAF1 53236 97 - 1
AAGAAGAAAAAUAAAACCCAAAACACGAAAUCGCAAUCAUUUUACUUUUGAUUAUUAACGAAAUAAAAUGAAAAGAUGCCGG-AGAAAGAGGAUGAAA
................(((......((..(((....((((((((.(((((........)))))))))))))...)))..)).-.....).))...... ( -12.50)
>DroYak_CAF1 43718 96 - 1
AA-AAGAAAAAUAAAACCCAAAACACGAAAUCGCAAUCAUUUUACUUUUGAUUAUAAACGAAAUAAAAUGAAAAGACGCCGG-AGAAAGAGGAUGAAA
..-.............(((......((...((....((((((((.(((((........)))))))))))))...))...)).-.....).))...... (  -9.50)
>DroAna_CAF1 52450 91 - 1
-------AACCCAAAACCCAAAACACGAAAUCGCAAUCAUUUUACUUUUGAUUAUAAACAAAAUAAAAUGAAAAGAUGCUGGGUGAAAGAGUUGGAAA
-------...((((.(((((.....((....))...((((((((.(((((........)))))))))))))........))))).......))))... ( -17.50)
>consensus
AA_AGAAAAAAUAAAACCCAAAACACGAAAUCGCAAUCAUUUUACUUUUGAUUAUAAACGAAAUAAAAUGAAAAGAUGCCGG_AGAAAGAGGAUGAAA
.........................((..(((....((((((((.(((((........)))))))))))))...)))..))................. (-10.22 = -10.13 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:08 2006