Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,440,083 – 14,440,179 |
Length | 96 |
Max. P | 0.611813 |
Location | 14,440,083 – 14,440,179 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.05 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -14.94 |
Energy contribution | -15.11 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.37 |
Mean z-score | -1.60 |
Structure conservation index | 0.58 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14440083 96 + 23771897 AAGCGAGAAGAUUUGCAGGGAGCCUAAAGAUCUGUCCAUGACCUUCUUUGGAUGGAGAUGUAGAGUGAAGUGCGGAAAGUUCUCGGUAA--CGAGAGG------ ...((((((..((((((....(((((....((((((((..........))))))))....))).))....))))))...))))))....--(....).------ ( -26.40) >DroPse_CAF1 58699 93 + 1 AUGGCAGAAGA------AGGAACCUUAAAAUCUGUCCAUGACCUUCUUUGGAGAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUGCCGAU-----GAGGGAGACG ((((((((..(------((....)))....)))).))))..(((((.((((((((...((((........)))).....)))).)))).-----)))))..... ( -25.50) >DroEre_CAF1 52745 96 + 1 AAGCGAGAAGAUUUGCAGGGAGCCUAAAGAUCUGUCCAUGACCUUCUUUGGAUGGAGAUGUGGAGUGAAGUGCGGAAAGUUCUCGAGAA--CGUGAGG------ ...((((((..((((((....(((((....((((((((..........))))))))....))).))....))))))...))))))....--(....).------ ( -26.90) >DroYak_CAF1 43241 98 + 1 AAGCGAGAAGAUUUGCAGGGAGCCCAAAGAUCUGUCCAUGACCUUCUUUGGAUGGAGAUGUAGAGUGAAGUGCGGAAAGUUCUCGAGAUCUCGAGAGG------ ..(((......((((((((....)).....((((((((..........))))))))..))))))......)))......(((((((....))))))).------ ( -27.80) >DroAna_CAF1 52003 85 + 1 AAGAGGG-------GCUG-GUACCUAAAAAUCUGUCCAUGACCUUCUUUGGCCAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUGGCGAA--A---AAG------ ..(((((-------..((-(.((..........)))))...)))))(((.(((((((.((((........)))).....))))))).))--)---...------ ( -21.80) >DroPer_CAF1 59073 93 + 1 AUGGCAGAAGA------AGGAACCUUAAAAUCUGUCCAUGACCUUCUUUGGAGAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUGCCGAU-----GAGGGAGACG ((((((((..(------((....)))....)))).))))..(((((.((((((((...((((........)))).....)))).)))).-----)))))..... ( -25.50) >consensus AAGCGAGAAGA___GCAGGGAACCUAAAAAUCUGUCCAUGACCUUCUUUGGAUAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUCGCGAA__C__GAGG______ ...((((((............(((((....((((((((..........))))))))....))).)).............))))))................... (-14.94 = -15.11 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:07 2006