Locus 523

Sequence ID 3L_DroMel_CAF1
Location 1,549,006 – 1,549,107
Length 101
Max. P 0.903744
window783

overview

Window 3

Location 1,549,006 – 1,549,107
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.35
Mean single sequence MFE -32.65
Consensus MFE -16.64
Energy contribution -16.39
Covariance contribution -0.25
Combinations/Pair 1.27
Mean z-score -2.41
Structure conservation index 0.51
SVM decision value 1.03
SVM RNA-class probability 0.903744
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1549006 101 + 23771897
UCGCAUCGCAUUGCUCAUUUCAUCGU--UAAACGAUCGGAUCAUU--------UGAUUGAUCGAUCGCAUGU---GCGAAGGAUUAAAGCGAUGAGAAGAUCGAAAGUGAGU------GA
((((.((((.(((.((.(((((((((--(...((((((.(((...--------.))))))))).((((....---))))........)))))))))).)).)))..))))))------)) ( -34.90)
>DroSec_CAF1 6703 101 + 1
UCGCAUCGCAUUGCUUAUUUCAUCGU--UAAACGAUCGGAUCAUU--------UGAUUGAUCGAUCGCAUGU---GCGAAGGAUAACAGCGAUGAGAAGCUCGACAGUGAGU------GA
((((.((((...(((..(((((((((--(...((((((.(((...--------.))))))))).((((....---))))........)))))))))))))......))))))------)) ( -33.70)
>DroSim_CAF1 6754 101 + 1
UCGCAUCGCAUUGCUCACUUCAUCGU--UAAACGAUCGGAUCAUU--------UGAUUGAUCGAUCGCAUGU---GCGAAGGAUUACAGCGAUGAGAAGCUCGACAGUGAGU------GA
((((.((((...(((...((((((((--(...((((((.(((...--------.))))))))).((((....---))))........))))))))).)))......))))))------)) ( -32.10)
>DroEre_CAF1 7312 96 + 1
UCGCAUUG-----CUC--GUAAUCGUUUUAAACGAUCGGAUCAUU--------UGAUUGAUCGAUCGCAUGU---GCGAAGGAUUGAAGCGAUGAGAAGCUCGACAGUGAGU------GA
((.(((((-----((.--.(((((........((((((.(((...--------.))))))))).((((....---))))..))))).))))))).)).(((((....)))))------.. ( -30.70)
>DroYak_CAF1 7348 94 + 1
UCGCAUCG-----CUC--GUCAGCGU--UAAACGAUCGGAUCAUU--------UGAUUGAUCGAUCGCAUGU---GCAAAGGAUUGAAGCGAUGAGAAGCUCGACAGUGAGU------GA
((((.(((-----((.--((((((..--....((((((.(((...--------.)))))))))(((((....---.(((....)))..))))).....))).))))))))))------)) ( -30.00)
>DroPer_CAF1 7989 115 + 1
UCGCC---AGUAGCUCUGUGAUCCGU--GAAUUGAUUGAAUCGUUGAUCGCAUCGACUGAUCGAUCGCAUGCAUCGUUAAGGAUUAAAGCAAUGAGAAUCCGCACAGUGAGUGUGAUUGA
....(---(((.....(((((((..(--((.((....)).)))..)))))))...)))).((((((((((.(((.((...(((((..(....)...)))))..)).))).)))))))))) ( -34.50)
>consensus
UCGCAUCGCAUUGCUCA_UUCAUCGU__UAAACGAUCGGAUCAUU________UGAUUGAUCGAUCGCAUGU___GCGAAGGAUUAAAGCGAUGAGAAGCUCGACAGUGAGU______GA
((((.(((.....(((................(((((.(((((..........))))))))))(((((........(....)......)))))))).....)))..)))).......... (-16.64 = -16.39 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:11 2006