Locus 5229

Sequence ID 3L_DroMel_CAF1
Location 14,418,378 – 14,418,477
Length 99
Max. P 0.914611
window8270

overview

Window 0

Location 14,418,378 – 14,418,477
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.35
Mean single sequence MFE -28.16
Consensus MFE -26.44
Energy contribution -26.88
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.36
Structure conservation index 0.94
SVM decision value 1.10
SVM RNA-class probability 0.914611
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14418378 99 + 23771897
AACAUGGGGACAUGAUGUUCACUCAACUGAAGCACACAGUUCGAAAGGCACAGGCUGUGCGCCGAGAAAGAGACGGCGGGUGGUACGAAGAAAGAGACG
..((((....)))).(((((((((.......((((((.((((....)).))..).)))))((((.........)))))))))).)))............ ( -30.30)
>DroSec_CAF1 20758 99 + 1
AACAUGGGGACAUGAUGUUCACUCGACUGAAGCACACAGUUCGAAAGGCACAGGCUGUGCGCCGAGAAAGAGACGGCGGGUGGUACGAAGAAAGAGACG
..((((....)))).((((((((((.(((..((.((((((((....)).....)))))).))(......)...)))))))))).)))............ ( -30.40)
>DroSim_CAF1 34947 94 + 1
AACAUGGGGACAUGAUGUUCACUCAACUGAAGCACACAGUUCGAAAGGCACAGGCUGUGCGCCGAGAAAGAGACGGCGGGUGGUACGAAGAAAG-----
..((((....)))).(((((((((.......((((((.((((....)).))..).)))))((((.........)))))))))).))).......----- ( -30.30)
>DroEre_CAF1 40124 99 + 1
AACAUGGGGACAUGAUGUUCACUCAACUGAAGCACACAGUUCGAAAGGCACAGGCUGUGCGGCGAGAAAGAGACGGCGGGUGGCACGAAGAAAGAGACG
..((((....)))).(((((((((.......((((((.((((....)).))..).)))))(.((.........)).))))))).)))............ ( -25.70)
>DroYak_CAF1 26220 99 + 1
AACACGGGGACAUGAUGUUCACUCAACUGAAGCACACAGUUCGAAAGGCACAGGCUGUGCGGCGAGAAAGAGACGGCGGGUGGUGCGAAGAGAGAGACG
....((.((((.....)))).(((..((...((((.....((....))(((..(((((.(..(......).))))))..)))))))..))...))).)) ( -24.10)
>consensus
AACAUGGGGACAUGAUGUUCACUCAACUGAAGCACACAGUUCGAAAGGCACAGGCUGUGCGCCGAGAAAGAGACGGCGGGUGGUACGAAGAAAGAGACG
..((((....)))).(((((((((.......((((((.((((....)).))..).)))))((((.........)))))))))).)))............ (-26.44 = -26.88 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:00 2006