Locus 5227

Sequence ID	3L_DroMel_CAF1
Location	14,416,864 – 14,416,957
Length	93
Max. P	0.916388

overview

Window 7

Location	14,416,864 – 14,416,957
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	92.21
Mean single sequence MFE	-21.68
Consensus MFE	-19.24
Energy contribution	-19.64
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.50
Structure conservation index	0.89
SVM decision value	1.11
SVM RNA-class probability	0.916388
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14416864 93 - 23771897
GCCCACCCAUUUUUUUCUCAGUGCUGGCACAUACGUUUGUGGCCAAAGGUGUGCACACCGGCAUUGCGUUUUAAUCUCUCAAUUCAAAUUCCA
................(.(((((((((..(((((.((((....)))).)))))....))))))))).)......................... ( -21.10)
>DroSec_CAF1 19258 90 - 1
GUUCACCCAUUU-UUUCUCAGUGCUGGCACAUACGUUUGCGGCCAAAGGUGUGC--ACCGGCAUUGCGUUUUAAUCUCUCAAUUCAAAUUCCA
............-...(.(((((((((..(((((.((((....)))).))))).--.))))))))).)......................... ( -22.80)
>DroSim_CAF1 33448 90 - 1
GCCCACUCAUUU-UUUCUCAGUGCUGGCACAUACGUUUGCGGCCAAAGGUGUGC--ACCGGCAUUGCGUUUUAAUCUCUCAAUUCAAAUUCCA
............-...(.(((((((((..(((((.((((....)))).))))).--.))))))))).)......................... ( -22.80)
>DroEre_CAF1 38563 89 - 1
GCU-GCCCAUUU-UCUCUCAGUGCUGGCACAUACGUUUGUGGCCAAAGGUGUGC--ACCGGCAUUGCGUUUUAAUCUCUCAAUUCAAAUUCCA
...-........-...(.(((((((((..(((((.((((....)))).))))).--.))))))))).)......................... ( -23.10)
>DroYak_CAF1 24691 86 - 1
----GCCCGUUU-UCUCUCAGUGCUGGCACAUAAGUCUGUGGCCAAAGGUGUGC--ACCGGCAUUGCGUUUUAAUCUCUCAAUUCAAAUUCCA
----........-...(.((((((((((.((((....)))))))...(((....--)))))))))).)......................... ( -18.60)
>consensus
GCCCACCCAUUU_UUUCUCAGUGCUGGCACAUACGUUUGUGGCCAAAGGUGUGC__ACCGGCAUUGCGUUUUAAUCUCUCAAUUCAAAUUCCA
................(.(((((((((..(((((.((((....)))).)))))....))))))))).)......................... (-19.24 = -19.64 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:57 2006