Locus 5225

Sequence ID 3L_DroMel_CAF1
Location 14,408,764 – 14,408,860
Length 96
Max. P 0.689437
window8264

overview

Window 4

Location 14,408,764 – 14,408,860
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -24.43
Consensus MFE -21.68
Energy contribution -21.87
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.33
SVM RNA-class probability 0.689437
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14408764 96 + 23771897
CUAAACACUCUUUCCGUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAUUCCCAAAACCGAAGGUCGUGACUG
.......................((((((((((........((((.....))))((.(((....))).))............)))))))))).... ( -21.20)
>DroPse_CAF1 32636 96 + 1
GUAAACACUUUUCCCGUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCAGCUGCGGCGAUCAGUCCGGGCAGCGAAGGUCGUGACUG
.......................(((((((((((((((...(.....)..)))))...((((((((.....)))...))))))))))))))).... ( -28.30)
>DroSim_CAF1 24871 96 + 1
CUAAACACUUUUCCCGUCAUUCACACGACCUUUCAACUUAUGACUUUUCCAGUUGGCUGCUGCGGCGACCAUUCCCAAAACCGAAGGUCGUGACUG
.......................((((((((((........((((.....))))((.(((....))).))............)))))))))).... ( -21.20)
>DroEre_CAF1 30179 96 + 1
CUUAACACUUUUCCCGUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAGUCCCAAAACCGAAGGUCGUGACUG
.......................((((((((((........((((..((((((.....)))).)).....))))........)))))))))).... ( -23.79)
>DroYak_CAF1 16383 96 + 1
CUUAACACUUUUCCCGUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAGUCCCAAACCCGAAGGUCGUGACUG
.......................((((((((((........((((..((((((.....)))).)).....))))........)))))))))).... ( -23.79)
>DroPer_CAF1 32640 96 + 1
GUAAACACUUUUCCCGUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCAGCUGCGGCGAUCAGUCCGGGCAGCGAAGGUCGUGACUG
.......................(((((((((((((((...(.....)..)))))...((((((((.....)))...))))))))))))))).... ( -28.30)
>consensus
CUAAACACUUUUCCCGUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAGUCCCAAAACCGAAGGUCGUGACUG
.......................((((((((((........((((..((((((.....)))).)).....))))........)))))))))).... (-21.68 = -21.87 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:54 2006