Locus 5224

Sequence ID 3L_DroMel_CAF1
Location 14,406,991 – 14,407,095
Length 104
Max. P 0.902107
window8263

overview

Window 3

Location 14,406,991 – 14,407,095
Length 104
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 90.65
Mean single sequence MFE -12.90
Consensus MFE -10.10
Energy contribution -10.34
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.78
SVM decision value 1.02
SVM RNA-class probability 0.902107
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14406991 104 + 23771897
UGAACUUAACAAAAAACUCGAA-----------AAACUCAACUUGAGCAGCGAACAAACAAAAAACGUUCAUCAUUGAAUGAUCCACACCUCACCCUACACAUUUUUUUUUUGUU
.......(((((((((.(((..-----------...(((.....)))...)))............((((((....)))))).........................))))))))) ( -14.00)
>DroSec_CAF1 9305 100 + 1
UGAACUUAACAAAAAACUCGAA-----------AAACUCAACUUGAGCAGCGAACAAACAAAAAACGUUCAUCAUUGAAUGAUCCACACCUCACCCUCCAC----UCUUUUUGUU
.......((((((((..(((..-----------...(((.....)))...)))............((((((....))))))....................----..)))))))) ( -13.30)
>DroSim_CAF1 23104 100 + 1
UGAACUUAACAAAAAACUCGAA-----------AAACUCAACUUGAGCAGCGAACAAACAAAAAACGUUCAUCAUUGAAUGAUCCACACCUCACCCUCCAC----UUUUUUUGUU
.......(((((((((.(((..-----------...(((.....)))...)))............((((((....))))))....................----.))))))))) ( -14.00)
>DroEre_CAF1 28411 101 + 1
UGAACUUAACAAAAAACUCG----------AAAAAACUUUACUUGAGCAGCGAACAAACAAAAAACGUUCAUCAUUGAAUGAUCCACACCUCACCCUCCAC----UUUUUUUCUU
...................(----------(((((((((.....)))..................((((((....))))))....................----.))))))).. (  -8.80)
>DroYak_CAF1 14597 111 + 1
UGAACUUAACAAAAAACUCGAAAAACCUCGAAAAAACUCUACUUGAGCAGCGAACAAACAAAAAACGUUCAUCAUUGAAUGAUCCACACCUCACCCUCCAU----UUUUUUUGUU
.......(((((((((.((((......)))).....(((.....)))..................((((((....))))))....................----.))))))))) ( -14.40)
>consensus
UGAACUUAACAAAAAACUCGAA___________AAACUCAACUUGAGCAGCGAACAAACAAAAAACGUUCAUCAUUGAAUGAUCCACACCUCACCCUCCAC____UUUUUUUGUU
.......(((((((((....................(((.....)))..................((((((....)))))).........................))))))))) (-10.10 = -10.34 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:53 2006