Locus 5223

Sequence ID 3L_DroMel_CAF1
Location 14,406,159 – 14,406,255
Length 96
Max. P 0.596145
window8262

overview

Window 2

Location 14,406,159 – 14,406,255
Length 96
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 83.45
Mean single sequence MFE -26.10
Consensus MFE -11.65
Energy contribution -13.32
Covariance contribution 1.67
Combinations/Pair 1.00
Mean z-score -3.57
Structure conservation index 0.45
SVM decision value 0.13
SVM RNA-class probability 0.596145
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14406159 96 + 23771897
GGCCAUGGCUUAGCGUGCCUUAUCUUUGGCUUAAAUAAAUUUAACGCUCGUGUAUUUCUUUUCAACGCUUCACCCAU-GGCACACCACCCC-CUC------CA--------A
.(((((((...((((((((........))).............(((....)))...........)))))....))))-)))..........-...------..--------. ( -24.60)
>DroPse_CAF1 29610 108 + 1
GGCCAUCGACUAGCGUGCCUUAUCUUUGGCUUAAAUAAAUUUAACGCUCGUGUAUUUCUUUUCAACGCUUCUCCCAGUCGAGGACCACAUC-UUCGUGGUCCUACCUC---C
((...((((((((((((((........))).((((....))))))))).((((...........)))).......))))))(((((((...-...)))))))..))..---. ( -31.70)
>DroSec_CAF1 8486 96 + 1
GGCCAUGGCUUAGCGUGCCUUAUCUUUGGCUUAAAUAAAUUUAACGCUCGUGUAUUUCUUUUCAACGCUUCACCCAU-GGCACACUACCCC-AUC------CA--------A
.(((((((...((((((((........))).............(((....)))...........)))))....))))-)))..........-...------..--------. ( -24.60)
>DroEre_CAF1 27601 103 + 1
GGCCAUGGCUUAGCAUGC-UUAUCUUUGGCUUAAAUAAAUUUAACGCUCGUGUAUUUCUUUUCAACGCUUCACCCAU-GGCACACCACCCCCUUC------CAACCAC-CUA
.(((((((...(((..((-(.......))).............(((....))).............)))....))))-)))..............------.......-... ( -18.80)
>DroYak_CAF1 13764 104 + 1
GGCCAUGGCUUAGCGUGCCUUAUCUUUGGCUUAAAUAAAUUUAACGCUCGUGUAUUUCUUUUCAACGCUUCACCCAU-GGCACACCACCCC-UCC------CACCCCCACCA
.(((((((...((((((((........))).............(((....)))...........)))))....))))-)))..........-...------........... ( -24.60)
>DroPer_CAF1 29615 108 + 1
GGCCAUCGACUAGCGUGCCUUAUCUUUGGCUUAAAUAAAUUUAACGCUCGUGUAUUUCUUUUCAACGCUUCUCCCAGUCGAGGACCACAUC-UUCGUGGUCCUCCCUC---C
((.....((((((((((((........))).((((....))))))))).((((...........)))).......))))(((((((((...-...)))))))))))..---. ( -32.30)
>consensus
GGCCAUGGCUUAGCGUGCCUUAUCUUUGGCUUAAAUAAAUUUAACGCUCGUGUAUUUCUUUUCAACGCUUCACCCAU_GGCACACCACCCC_UUC______CA_CC_C___A
.(((((((...((((((((........))).............(((....)))...........)))))....)))).)))............................... (-11.65 = -13.32 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:52 2006