Locus 5222

Sequence ID 3L_DroMel_CAF1
Location 14,405,736 – 14,405,836
Length 100
Max. P 0.909068
window8261

overview

Window 1

Location 14,405,736 – 14,405,836
Length 100
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 81.93
Mean single sequence MFE -38.42
Consensus MFE -27.61
Energy contribution -28.92
Covariance contribution 1.31
Combinations/Pair 1.16
Mean z-score -2.80
Structure conservation index 0.72
SVM decision value 1.06
SVM RNA-class probability 0.909068
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14405736 100 - 23771897
-----ACGGGCUGUGGGCUCGGGAGGAGUAACUCCUGCUGAGUGUGUUUCUAUAUAUUUUUUGCAAGUG------UGUGUGCUUGUGGGGACAACAAGUUUCCCGCAGCAG
-----....(((((((((((((.(((((...))))).)))))).......(((((((((.....)))))------)))).(((((((....).))))))...))))))).. ( -40.50)
>DroSec_CAF1 8088 99 - 1
------CGGGCUGUGGGUUCGGGAGGAGUAACUCCUGCUGAGUGUGUUUCUAUACAUUUUUUGCAAGUG------UGUGUGCUUGUGGGGACAACAAGUUUCCCGCAGCAG
------...(((((((((((((.(((((...))))).)))))........(((((((((.....)))))------)))).(((((((....).))))))..)))))))).. ( -40.50)
>DroSim_CAF1 21851 100 - 1
-----ACGGGCUGUGGGAUCGGGAGGAGUAACUCCUGCUGAGUGUGUUUCUAUACAUUUUUUGCAAGUG------UGUGUGCUUGUGGGGACAACAAGUUUCCCGCAGCAG
-----....(((((((((((((.(((((...))))).)))).........(((((((((.....)))))------)))).(((((((....).)))))).))))))))).. ( -42.20)
>DroEre_CAF1 27166 100 - 1
-----GCGGGCUGUGGGUUCGGGAGGAGCAACUCCUGCUGAGUGUGUUUCUAUAUAUUUGUGGCAAGUG------UGUGUGCUUGUGGGGACAACAAGUUUCCCGCAGCAG
-----....(((((((((((((.(((((...))))).)))))........((((((((((...))))))------)))).(((((((....).))))))..)))))))).. ( -40.50)
>DroYak_CAF1 13294 111 - 1
GGGGGGCGGGCUGUGGGCUCGGGGGGAGUAACUCCUGCUGAGUGUGUUUCUAUAGAUUUUUUGCGAGUGUGCUUGUGUGUGCUUGUGGGGACAACAAGUUUGCCGCAGCAG
..(.((((((((.((.((((((.(((((...))))).))))))..............((((..((((((..(....)..))))))..))))))...)))))))).)..... ( -44.10)
>DroPer_CAF1 29225 86 - 1
-----GCUGGAUCUAGG---GGGAGGUGGAUCUUCUGGUGGGCCUGUGUGUGUGU-----------GUG------UUGGUGUGUGUGGGGACAACAAGUUUCCCGCAGCAG
-----(((((.((((..---((((((....))))))..))))))...........-----------...------.......(((.((..((.....))..)))))))).. ( -22.70)
>consensus
_____GCGGGCUGUGGGCUCGGGAGGAGUAACUCCUGCUGAGUGUGUUUCUAUAUAUUUUUUGCAAGUG______UGUGUGCUUGUGGGGACAACAAGUUUCCCGCAGCAG
.........(((((((((((((.(((((...))))).)))))......................................(((((((....).))))))..)))))))).. (-27.61 = -28.92 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:51 2006