Locus 5221

Sequence ID 3L_DroMel_CAF1
Location 14,402,708 – 14,402,807
Length 99
Max. P 0.597254
window8260

overview

Window 0

Location 14,402,708 – 14,402,807
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.67
Mean single sequence MFE -20.35
Consensus MFE -10.69
Energy contribution -11.88
Covariance contribution 1.19
Combinations/Pair 1.07
Mean z-score -1.89
Structure conservation index 0.53
SVM decision value 0.13
SVM RNA-class probability 0.597254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14402708 99 - 23771897
CAUUUAAAACAGUAGCCGAAAAGAAGG-UAAA--CAGCAG-AAAAUAC--ACAAUUGCCAUGGCGAUUCUCGCUUCAUAAGUAUGCAGCUACAGUGAGAAUGCCU
..............(((........))-)...--..((((-.......--....))))...(((.(((((((((.....(((.....)))..)))))))))))). ( -18.70)
>DroPse_CAF1 25812 95 - 1
CACU-GAAACAGUAGCCGAA-AGAAGGUUAUC--CAACAU-AA-UUACCGCUCAUUGCCUGGGCGAAUUUCCUUUCAUAAGUACU---CUACUAA-AGAAUUCCU
.(((-(...))))....(((-((..((....)--).....-..-....((((((.....))))))......))))).........---.......-......... ( -15.00)
>DroSim_CAF1 18824 99 - 1
CAUUUAAAACAGUAGCCAAAAAGAAGG-UAAA--CAGCAG-AAAAUAU--ACAAUUGCCAUGGCGAUUCUCCCUUCAUAAGUAUGCAGCUACUGUGAGAAUGCUU
(((((...((((((((......(((((-....--(....)-.......--..((((((....))))))...)))))....(....).))))))))..)))))... ( -23.20)
>DroEre_CAF1 24018 98 - 1
CAUUUAAAACAGUAGCCGAAGAGAAGG-UAAA--CACCAG-AAAAUAC--ACAAUUGCCAUGGCGAUUCUCCUUUCAUAAGUACGCAGCUACUGUGAGA-AUGCG
(((((...((((((((.((((((((((-(...--.)))..-.......--....((((....)))))))))..)))....(....).))))))))..))-))).. ( -25.20)
>DroYak_CAF1 10096 100 - 1
CAUUUAAAACAGUAGCCGAAAAGAAGG-UAAA--CAGCAAAAAAAUAC--ACAAUUGCCAUGGCGAUUCUCCCUUCAUAAGUAUGCAGCUACUGUGAGAAAUCCU
.((((...((((((((......(((((-....--..............--..((((((....))))))...)))))....(....).))))))))...))))... ( -20.80)
>DroAna_CAF1 21835 97 - 1
UAUU--AAACAGUAGCCGAAAAAAAUA-UACAGCCAGCAA-AAAA--U--ACAAUUGCCAUGGCAAAUUUCCUUUCAUAAUAAAGCAGCUACUGUAGAAAUGCUU
....--..((((((((...........-....((((((((-....--.--....))))..)))).......((((......))))..)))))))).......... ( -19.20)
>consensus
CAUUUAAAACAGUAGCCGAAAAGAAGG_UAAA__CAGCAG_AAAAUAC__ACAAUUGCCAUGGCGAUUCUCCCUUCAUAAGUAUGCAGCUACUGUGAGAAUGCCU
........(((((((((........)..........................((((((....))))))...................)))))))).......... (-10.69 = -11.88 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:50 2006