| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,390,214 – 14,390,313 |
| Length | 99 |
| Max. P | 0.606065 |
| Location | 14,390,214 – 14,390,313 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.04 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -15.48 |
| Energy contribution | -15.26 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14390214 99 + 23771897 UCAACAU----CACAUCGAA--------AUAUAUAUCGGAGGGCAUAU----CGUGUCCAGACCUUUGAUGUGAUACCGAUUCCGUUACGGAUCCGUUUUC-UGGACUCUUUAAAA .....((----(((((((((--------.........((.((((((..----.))))))...)))))))))))))...((.((((..(((....)))....-)))).))....... ( -24.90) >DroEre_CAF1 11727 99 + 1 UCAACAU----CACAUCAAA--------AUAUGUAUCGGAGGGCAUAU----CGUGUCCAGACCUUUGAUGUGAUACCGAUUCCGUUACGGAUCCGUUUUG-UGGACUCUUUAAAA .....((----(((((((((--------.........((.((((((..----.))))))...)))))))))))))...((.((((..(((....)))....-)))).))....... ( -25.20) >DroAna_CAF1 10724 116 + 1 UAAACUUUUCCCACAUCAAAAGUAAAAUAUAUAUAUCUGAAGGUAUAUAUCUGAUGAUGAGACCUUUGAUGUGUUGCCGAUUCCGUUACGGAUCCGUUUGGCUUAGCCAUUUAAAA ...........(((((((((.((...(((((((((((....)))))))))......))...)).)))))))))..(((((.((((...)))).....))))).............. ( -25.50) >consensus UCAACAU____CACAUCAAA________AUAUAUAUCGGAGGGCAUAU____CGUGUCCAGACCUUUGAUGUGAUACCGAUUCCGUUACGGAUCCGUUUUG_UGGACUCUUUAAAA ...........(((((((((...............((...((((((.......)))))).))..)))))))))....((..((((...))))..)).................... (-15.48 = -15.26 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:49 2006